Query= MSMg01no168_j09.b1 MSMg01no168_j09.b1 CHROMAT_FILE:
MSMg01no168_j09.b1 PHD_FILE: MSMg01no168_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:56 2005
(307 letters)
>mm_chr3_5229986_5230692
Length = 707
Score = 540 bits (279), Expect = e-158
Identities = 297/303 (98%)
Strand = Plus / Plus
Query: 5 gaattcacatgaattttagggtcttcgttgtccattaaatacaataatagaatagaccac 64
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattcacatgaattctagggtcttcgttgtccattaaatacaataatagaagagaccac 264
Query: 65 aatgcttgctccagtctttcagtgaactcaatctgcttgagagcctgtaagtcagagtgc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatgcttgctccagtctttcagtgaactcaatctgcttgagagcctgtaagtcagagtgc 324
Query: 125 ttccaaagtgtttccagggaaacatttttctgtatattgttattaagagattttgatatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttccaaagtgtttccagggaaacatttttctgtatattgttattaagagattttgatatg 384
Query: 185 tcatgaaatgaatataagtcatactattccatggtgtcctattaacctaaattcctataa 244
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 tcatgaaatgaatataagtcatactattccatggtgtcctattaaccaaaattcctataa 444
Query: 245 gcctggaggaaaaaaatccagattcatgtatttttatatgtaaatgtctacagaatcatt 304
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 gcctggaggaaaaaaatccagattcatgtataaatatatgtaaatgtctacagaatcatt 504
Query: 305 aag 307
|||
Sbjct: 505 aag 507
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space: 208004
Effective search space used: 208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no168_j09.g1 MSMg01no168_j09.g1 CHROMAT_FILE:
MSMg01no168_j09.g1 PHD_FILE: MSMg01no168_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:56 2005
(243 letters)
>mm_chr3_5370380_5371022
Length = 643
Score = 433 bits (224), Expect = e-126
Identities = 239/244 (97%), Gaps = 2/244 (0%)
Strand = Plus / Minus
Query: 1 attagtaattactgtttttctattttgtgacttacatacaaccatgagagaaaaccttca 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 556 attagtaattactgtttttctactttgtgacttacatacaaccatgagagaaaaccttca 497
Query: 61 gattaactagagcaattttgtttttcca-acattaaaattattaaattaattttccatta 119
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 496 gattaactagagcaattttgtttttccata-attaaaattattaaattaattttccatta 438
Query: 120 acatgtgatttagaaaagcttcctagattacatattttcataattgataactttctgcat 179
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 acacgtgatttagaaaagcttcctagattacatattttcataattgataactttctgcat 378
Query: 180 ataaccatattagcagaggttgactactcatatagtaagtattgtacacacagcatgtgt 239
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 377 ataaccatattagcagaggttgactactcgtatagtaagtattgtacacacagcatgtgt 318
Query: 240 ctag 243
||||
Sbjct: 317 ctag 314
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
