BAC Information

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BAC

Clone NameMSMg01-168L14
Chromosome3 (Build37)
Map Location 115,520,753 - 115,521,045
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfm3, EG546808, Edg1
Downstream geneDph5, LOC626061, Slc30a7, Extl2, Vcam1, Gpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168L14.T7 (MSMg01no168_l14.b1)MSMg01-168L14.TJ (MSMg01no168_l14.g1)
ACCAG365814AG365815
length705830
length of high quality
(start - end)
308 (51 - 358)40 (77 - 116)
definitionCHROMAT_FILE: MSMg01no168_l14.b1 PHD_FILE: MSMg01no168_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:09 2005CHROMAT_FILE: MSMg01no168_l14.g1 PHD_FILE: MSMg01no168_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTAAAGTATGCACCACACTTGTGCGTGTGCACGCGCGCGC
GCGCGCGCACACACACACACACACACACAGTCTCATCCACAGTTGTGTTT
TCTCCACTTAGCCCACCCTTTTTTCAGCACAGACAGTGGAATCTTTTTGT
TTAAATGGGTGAAGCATGTGGCAGTGGGTGGCACACACGGGTAGAGATGA
GACTGTAGGAAACTCCAGACGCCAAGCTGGAGAAGGAATACCTGCCTTTG
TTGCGCCTTTTAGACATGTTGTCTCTGGGGCAGAGAAAGATCAGGTAAGC
AACCCTGTTTTTTGTAAAAACCCCCCCCCCTCTTTCTTTCTGGTTTGNCT
TTGNGCTTGCTACTTAACGACACTGATCTGTGAGACAAGCTCTGCCTGCT
CCCATTGCTAAACCAGGGTGCATCTCAAAGATCCTATGTCACATGGATTT
GGGGTCATTCTGTGGTAAACCTCCATGTTCCTCTCTACAGTTTACCCTGC
CTTTCTGCTACTCCAGTGAGTACACCCCATATCAGTCTTTGGCCTTGGTT
CCACCCTTATTATTACCTCTCATGGCCTACATTTTAGGCACGACATTTGT
TTCTGATCCATACGACTATTTTCCACACTTAATAAATCCTTTTTTCTCCT
ATTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTACAAGACCCAGGGGGAAAGGG
AAGGGGGAGGGGGGTTNTTTCNNNNNNNNNTNNTNNNNNTGTTGGTTTTT
TTTTTTTTTNTTTTTTTTGGTGAAAGTTTGTTGTTGGCTTTGAGAAATGA
TTGTTCGTATGATTGACTGTGTCTGGTCCGGTTTCCCCATTTTTATTCCC
CTATATATCCACAACTTTATACTACCACTTCCTATCACCCCCTTTTACAC
CTTCCACCTTTTTTTTTTCCCGCGAGATGCCCACGCGGAGGAGAAAAAAT
TTTTAGTAATATTCCCAAGAACAAGTCCCCTTGTTTTTTTTTTTTGGGTG
GTAGGTGGGTGCGCGGTGTTCCCAACAAAAAAAAAAAACTCCGGGGGGGG
GGGGGGGGGGTGGGTTTTTCCTCCCCATTTTAGACACTTTCAAACGTTTA
TGGTGTTGATTTTGACCATGACATCTTTATCGCACACGGTAGGCGGCGGT
GTTCACGTCTTACCGCAACATATGTACGGTAGATATGAACACATTGCACA
ATCTTTTGTACATGAATTTACTATTAGCAAAAGGCCTGGTTGGTGTCGGA
TAACCCGTGCCGTGAGCGAGATAATATATCGGTTTTTAATATAATTATAC
AGGGCGGCGCCATGCGGGAATTATAACGGGGTCCCTCACTAAGGCCTTCC
NATATACAGCTAGACAATGTATTTTGTGAATGTTTTTATTTGCGGTATTT
GTGTTCCCGCTCCCATAGTTGAGTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_l14.b1 MSMg01no168_l14.b1 CHROMAT_FILE:
MSMg01no168_l14.b1 PHD_FILE: MSMg01no168_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:09 2005
         (308 letters)



>mm_chr3_115520474_115521181
          Length = 708

 Score =  489 bits (253), Expect = e-143
 Identities = 286/303 (94%), Gaps = 10/303 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaaagtatgcaccacacttgtgcgtgtgcacgcgcgcgcgcgcgcgcacacac 64
           ||||||||||||||||||||||||||||||||||          |||| | | |||||||
Sbjct: 572 gaattcctaaagtatgcaccacacttgtgcgtgt----------gcgcacacacacacac 523

                                                                       
Query: 65  acacacacacacacagtctcatccacagttgtgttttctccacttagcccaccctttttt 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 522 acacacacacacacagtctcatcctcagttgtgttttctccacttagcccaccctttttt 463

                                                                       
Query: 125 cagcacagacagtggaatctttttgtttaaatgggtgaagcatgtggcagtgggtggcac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 cagcacagacagtggaatctttttgtttaaatgggtgaagcatgtggcagtgggtggcac 403

                                                                       
Query: 185 acacgggtagagatgagactgtaggaaactccagacgccaagctggagaaggaatacctg 244
           |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 402 acacgggtggagatgagactgtaggaaactccagacgccaagctggagaaagaatacctg 343

                                                                       
Query: 245 cctttgttgcgccttttagacatgttgtctctggggcagagaaagatcaggtaagcaacc 304
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 342 cctttgttgcgccttttagacatgctgtctctggggcagagaaagatcaggtaagcaacc 283

              
Query: 305 ctg 307
           |||
Sbjct: 282 ctg 280


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)