BAC Information

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BAC

Clone NameMSMg01-169A04
Chromosome3 (Build37)
Map Location 80,619,996 - 80,620,279
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem144, 1110032E23Rik, EG626797, Gria2
Downstream geneGlrb, EG626841, Pdgfc, LOC229443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169A04.T7 (MSMg01no169_a04.b1)MSMg01-169A04.TJ (MSMg01no169_a04.g1)
ACCAG366019AG366020
length724702
length of high quality
(start - end)
---283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no169_a04.b1 PHD_FILE: MSMg01no169_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:36 2005CHROMAT_FILE: MSMg01no169_a04.g1 PHD_FILE: MSMg01no169_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATCTCTGATGAGGGCTTCCTCAGTCTTACAGAAGTGTATAACACTTC
CCTAAGGAAAACATGGGGGCTGCCAACGGTAAACTTCACGTGAGCCAACA
CGGGGACGCGAATCTGGCGGTAATCGTTAAAAGACGGGAGACTACCATGT
CATGTCAGTGCCTTTGAAAAAAATATGAAAGGAGAGCTGTACTACGAATG
CAATTATGATTTTATTACAAAAGCCGTTTACCTCATACAGGAGCTAATAA
TTTCCATGAGATGGCAGACAGCTGATAATTAGAAGAAGACGGATCTATTA
TGGAAGGACAATTTTTTTCTTTTCCTGCCCCCCCCCCTTGCTGGAAACTG
AATGCTGTCTGAGTATGCTGATTGCATGGATTGTGAACTGATAGATGTTA
ACAGAACAGTATGAGCTATAAAATCGATAGCAGGTCTGTCCGCAGTCTCT
TGCTTTACTAACTGTTAAATATAACTGCAGCTTTCATGACGTGCATCCTG
TTTTTCCACGGCATTCCCGGTACACATGAGACGATGCATAACCACCGCCA
AGGCGAGTAAAACAGATCAAGATGCCTTGGGAATACAGTAATGCTGCCGC
CCATCGCTGTCTTTCCCACTAGAGCTTCCCTTTATGCTTAGCCAATTGGG
CAGACTGTCCAGACTGCTTCTAAA
TCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTAGCATCACGGACACAAAATAT
TTATAAATCTTAAAGTTGTTAGAAGGAAGGTACAATTTGGGGTATATTTG
GACCCCAAGTTACCTTGTGACTTGAGAATCTCTGAGTTTGTGTACATAGT
AGCAAATGATGCTGTTCCAAGTGATTCACTGTGTCCAGACATTTGAAGGC
ACAGCCTGGAAATGATAGAATATTGCATTCACAGCAGAGTATTCTAAGAT
TAGAGATTTTTTCTATACAATGTTATATGACTTCTCCATTATTACTCTTA
GTATTATTTATCTATTTACGCCCCCCGCAACCCATGTCTTTCTTCTCAGT
ATTCCTTTCTCAATCTCTCCATTTTTAACCAATATTCCCAAGTTCTATTT
ATTTCTAGCTTCAGCAATGAATCTCAAATGAGAACGATGAATTTATTTGT
CCACGGATGTAAGCACTTGCTTAATGTGGGCCATGTGACCTAAATGCTGT
GACATCTGAACACTGAATTCTGTTTTGTCCCGTTGATCAGTCTACAAACA
TATGAGGACTTAATCACAGCGCTTAATATTCACGCCCGTCTCACAAATTG
AAAGTGTTTAGATTAAGTAATTTCTGATACAACCTTGGCATCAAATTTAA
TA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_a04.g1 MSMg01no169_a04.g1 CHROMAT_FILE:
MSMg01no169_a04.g1 PHD_FILE: MSMg01no169_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:36 2005
         (283 letters)



>mm_chr3_80619796_80620479
          Length = 684

 Score =  503 bits (260), Expect = e-147
 Identities = 278/284 (97%), Gaps = 1/284 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attagcatcacggacacaaaatatttataaatcttaaagttgttagaaggaaggtacaat 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 attagcatcacagacacaaaatatttataaatcttaaagttgttagaaggaaggtacaat 425

                                                                       
Query: 61  ttggggtatatttggaccccaagttaccttgtgacttgagaatctctgagtttgtgtaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttggggtatatttggaccccaagttaccttgtgacttgagaatctctgagtttgtgtaca 365

                                                                       
Query: 121 tagtagcaaatgatgctgttccaagtgattcactgtgtccagacatttgaaggcacagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
Sbjct: 364 tagtagcaaatgatgctgttccaagtgattcactgtgtccagacaattgagggcacagtc 305

                                                                       
Query: 181 tggaaatgatagaatattgcattcacagcagagtattctaagattagaga-ttttttcta 239
           ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 304 tggaaatgatagaatattggattcacagcagagtattctaagattagagatttttttcta 245

                                                       
Query: 240 tacaatgttatatgacttctccattattactcttagtattattt 283
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tacaatgttatatgacttctccattattactcttagtattattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 684
Length adjustment: 9
Effective length of query: 274
Effective length of database: 675
Effective search space:   184950
Effective search space used:   184950
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)