BAC Information

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BAC

Clone NameMSMg01-169D10
Chromosome3 (Build37)
Map Location 14,027,297 - 14,027,599
singlet/doubletsinglet
Overlap gene0710005M24Rik
Upstream geneLOC100039823, LOC100039861, LOC100041679, LOC100041667, LOC100039882
Downstream geneEG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169D10.T7 (MSMg01no169_d10.b1)MSMg01-169D10.TJ (MSMg01no169_d10.g1)
ACCAG366152AG366153
length705770
length of high quality
(start - end)
311 (36 - 346)---
definitionCHROMAT_FILE: MSMg01no169_d10.b1 PHD_FILE: MSMg01no169_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:51 2005CHROMAT_FILE: MSMg01no169_d10.g1 PHD_FILE: MSMg01no169_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTAC
TGAATTTAATTTAAATGCTCATATTTGCGTCTGAAAATAATTATTATATA
TGCACCAGAATGAGCACTGCTAAATATAGGTATTCTTGATGAATTTTAGA
CCAAATTACACTTATTGTTTTGAGACAGGGTCTCACTGTGTGTTACTACT
CCCATGGTCAAAAACCAAATTGGTTTTTGCCATGTAGTTTTACTCTTAAT
TATTATAATAATTTCCGCTATTGATCCATAAATCACTAGGAATATATATA
ACTTTTTTGACAGCTTAATTCATGTGTATAATAAATTTTGTTTATTTTTT
TTTCATTACACCTCCTTCAATGCCTTCCTTTTCTCAGAGAAACCCTTTTT
CTTCTCAACAATCTCTCTACTACTTTAATGGTTTACTTGTTTGTTTGTTT
GTTTTTGTGTTTGTTTGGATGTGTGTGTGACCATGTGTGAATGTGTGTGC
ATGAGTCTGTATGTATGCATAAGCATGTAGGTGTGTATATATCTGTGTGA
CTCTGTGTGTGTGAGAGATTATGTGTGATAGAGAGATAGAATATGTGTGT
GTGAGTGTGTATTACTATTGAGTATAATTATGCTTGTTTGAATGAACATA
GATGATGCTTTCTTTACTGGATTATATGTAATTTTTTAGTCATTACATCA
GTGAC
AGAAGTGATACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATCTACGGAAGTTCCTCAAAGGA
AATAATGGACTTAGGCGACATCCCAGGATACTTCAGTTACCGAAACACTT
AAAATAACCACCGGAAACAAGGCTTCAGAACTTTTGGAAACCCTAAATAT
TTTAACGGAAAAGGGAAGGCAACCCTAACTTTCCCCAGTATAGAAAAGGG
GCTATAAAAAATTTCAGGGAAAGTTGATTTATTAAGTCTATCAGGACTCT
TCCAAATAAAAATAGGACCCACGGACTCTTTTTTTTTCCATGGAAACACT
TAACAGCAAAGGGGGATTTACCTGATTTTCCAAACAGCCCCCTTGTTCCT
TATTTGGTATAAAAGTGAGTTNNGGGGGAAAAAAATNGAGCTATAAAAGA
CGGGGGGGGGGGGGGGCCACCTTAACTCACGTAGGGTAAGACCCCACAGG
TTCCCACCCAGGGACTCAATCGCCCAAAATAACAAACCCTCGGCACGCCT
CTCAAGCCCCCAAATCGTCCCCCAACTTCTCCAAAAGTCCCCCCACTATC
CCCGACCTCCACGGCCACACTCCTGCACTTGCTGCTAGCATCGCCAAACA
CGGCCCCCCCCGCGACACCCGCCAACCACCGCAATGGAACCACATTGCTA
CCAATGCCCCGCGCACTCCCTTCCAACCCACCCCCCGTAAAACGCATATC
GCTACACATTAAACACCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_d10.b1 MSMg01no169_d10.b1 CHROMAT_FILE:
MSMg01no169_d10.b1 PHD_FILE: MSMg01no169_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:51 2005
         (311 letters)



>mm_chr3_14027093_14027800
          Length = 708

 Score =  569 bits (294), Expect = e-166
 Identities = 302/306 (98%), Gaps = 3/306 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttactgaatttaatttaaatgctcatatttgcgtctgaaaataattattatat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttactgaatttaatttaaatgctcatatttgcgtctgaaaataattattatat 264

                                                                       
Query: 65  atgcaccagaatgagcactgctaaatataggtattcttgatgaattttagaccaaattac 124
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 atgcaccagaatgagcactgctaaatataggtattcttaatgaattttagaccaaattac 324

                                                                       
Query: 125 acttattgttttgagacagggtctcactgtgtgttactactcccatggtcaaaaaccaaa 184
           ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||
Sbjct: 325 acttattgttttgagacagggtctcactgtgtgttact---cccatggtcaaaaaccaaa 381

                                                                       
Query: 185 ttggtttttgccatgtagttttactcttaattattataataatttccgctattgatccat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttggtttttgccatgtagttttactcttaattattataataatttccgctattgatccat 441

                                                                       
Query: 245 aaatcactaggaatatatataacttttttgacagcttaattcatgtgtataataaatttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaatcactaggaatatatataacttttttgacagcttaattcatgtgtataataaatttt 501

                 
Query: 305 gtttat 310
           ||||||
Sbjct: 502 gtttat 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 708
Length adjustment: 9
Effective length of query: 302
Effective length of database: 699
Effective search space:   211098
Effective search space used:   211098
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)