BAC Information

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BAC

Clone NameMSMg01-169E18
Chromosome3 (Build37)
Map Location 11,283,392 - 11,343,025
singlet/doubletdoublet
Overlap genenone
Upstream gene1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16, LOC670564, LOC383826, EG667978
Downstream geneLOC667999
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169E18.T7 (MSMg01no169_e18.b1)MSMg01-169E18.TJ (MSMg01no169_e18.g1)
ACCAG366208AG366209
length712710
length of high quality
(start - end)
318 (46 - 363)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no169_e18.b1 PHD_FILE: MSMg01no169_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:57 2005CHROMAT_FILE: MSMg01no169_e18.g1 PHD_FILE: MSMg01no169_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,283,392 - 11,283,705)(11,342,741 - 11,343,025)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACTAAAATATTTAGCACCAATATCAATATTTTAACAAAATGTT
AAAGAGAAAGACAAAGGTTTTGTGGGGTTTTTTATACTGCATTTTAAGAG
CAGCACAGAGGTTTGTTTGTCTGGGTTTTTTCTTTCATTCCTTTGTTCCA
GAAACATCAATATAAACAGTGCATTTCAGAAGGCAGAACGAGAACTACAT
GTACAAACCTGATGGATTTGTTTACCTGTCACGGGGCACCTCTGCACAGG
CTTTGTGATCATTTTCTACTGAGAGTTTTATAGGAGCATGTAGCCTTGAA
CTGATGAATTACTGTATTTTTTGCTCCCCCCCCACCCCCCGTTATTTTAA
TCTAAAAAAAAAACTAAAAACAAACAAACAAAAAAATGAGATTGAATTTT
TTAAGTACACATTGCTCAGAGGAAATAGTAGTAATTTTATCACCCTCCTT
TAGCTTCATTATCATAAAATGTTACCTAATAAAGGCCTAACAAACCATGA
CATCAAAGCCCTTGTCATCTGATTCTTTATTTTCATGTAATGTAGAGTGT
TAAAATCTCCCCTGGACTCAGAACAGCTAGAATTAACTACATACAATTTT
CTTTCCCACTCTGCCTTCCAACTCTCCAGCTTAGGAAGAGAAATTTAGGA
CAGCACAATTTG
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCACAGCAGTCCAAGCCTTGCT
TGTAAGAGTTCATAACATTTATCATTTCTTCTACCAAGTTTTACATGGGC
ACCATGTGTTCTAATTCTCTGGCACTAAATATTGAATCAGTTTGACTCCT
GCTGACAAATGAATAAAAATGAAAGTGCTTGGTAGGAGGAAAGAGTTTAG
CTCTTTTTTCAAAAAATAATTTCTTCTTCCTTTTCTCCTTCCAGTTCCTT
CCTCTCCCCTCTGCTTCCCTCTATTCTTCCTTCCCTTTCTTCTCAGATAA
GACAAAGCCTCTTTTTTATATCACCCCCCCCTCCCATATCAAGTTGCAGT
ACACATCTTCTCCAACTGAGACTAGACAAAAAAACCCAGTTAGGGAAAAG
GGATCCAAAGGCAGGCAACAGAATTAGACACAGCTCCTGATCAAGTTGTT
AGGGGTCCCACATGAAGATCAAGCAGCACATCTGATACATGGGTATAGGG
GGCCTACGTCCATCCCATGAATGCTCTTTGGTTGATATTTCATTCTTTGT
AGGCCCCTACTGAATGCAAGTCAATTGATTATGTAGGTTTTTTTGTTGCT
CAAGTTGTTGGATTTGCTTTGGGTTGTTTCTTTGATTGTACATTTGTCCT
TAATTCCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_e18.b1 MSMg01no169_e18.b1 CHROMAT_FILE:
MSMg01no169_e18.b1 PHD_FILE: MSMg01no169_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:57 2005
         (318 letters)



>mm_chr3_11283188_11283905
          Length = 718

 Score =  600 bits (310), Expect = e-176
 Identities = 313/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcactaaaatatttagcaccaatatcaatattttaacaaaatgttaaagagaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcactaaaatatttagcaccaatatcaatattttaacaaaatgttaaagagaaa 264

                                                                       
Query: 65  gacaaaggttttgtggggttttttatactgcattttaagagcagcacagaggtttgtttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gacaaaggttttgtggggttttttatactgcattttaagagcagcacagaggtttgtttg 324

                                                                       
Query: 125 tctgggttttttctttcattcctttgttccagaaacatcaatataaacagtgcatttcag 184
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcttggttttttctttcattcctttgttccagaaacatcaatataaacagtgcatttcag 384

                                                                       
Query: 185 aaggcagaacgagaactacatgtacaaacctgatggatttgtttacctgtcacggggcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaggcagaacgagaactacatgtacaaacctgatggatttgtttacctgtcacggggcac 444

                                                                       
Query: 245 ctctgcacaggctttgtgatcattttctactgagagttttataggagcatgtagccttga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctctgcacaggctttgtgatcattttctactgagagttttataggagcatgtagccttga 504

                         
Query: 305 actgatgaattact 318
           ||||||||||||||
Sbjct: 505 actgatgaattact 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no169_e18.g1 MSMg01no169_e18.g1 CHROMAT_FILE:
MSMg01no169_e18.g1 PHD_FILE: MSMg01no169_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:57 2005
         (287 letters)



>mm_chr3_11342633_11343319
          Length = 687

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcacagcagtccaagccttgcttgtaagagttcataacatttatcatttcttctacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cttcacagcagtccaagccttgcttgtaagagttcataacatttatcatttcttctacca 334

                                                                       
Query: 61  agttttacatgggcaccatgtgttctaattctctggcactaaatattgaatcagtttgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agttttacatgggcaccatgtgttctaattctctggcactaaatattgaatcagtttgac 274

                                                                       
Query: 121 tcctgctgacaaatgaataaaaatgaaagtgcttggtaggaggaaagagtttagctcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tcctgctgacaaatgaataaaaatgaaagtgcttggtaggaggaaagagtttagctcttt 214

                                                                       
Query: 181 tttcaaaaaataatttcttcttccttttctccttccagttccttcctctcccctctgctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tttcaaaaaataatttcttcttccttttctccttccagttccttcctctcccctctgctt 154

                                                        
Query: 241 ccctctattcttccttccctttcttctcagataagacaaagcctc 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 ccctctattcttccttccctttcttctcagataagacaaagcctc 109


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)