BAC Information

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BAC

Clone NameMSMg01-169F13
Chromosome3 (Build37)
Map Location 28,071,347 - 28,071,629
singlet/doubletsinglet
Overlap genenone
Upstream geneAadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b, E030011K20Rik, Pld1
Downstream geneTnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527, 6130401L20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169F13.T7 (MSMg01no169_f13.b1)MSMg01-169F13.TJ (MSMg01no169_f13.g1)
ACCAG366245AG366246
length724746
length of high quality
(start - end)
274 (46 - 319)284 (76 - 359)
definitionCHROMAT_FILE: MSMg01no169_f13.b1 PHD_FILE: MSMg01no169_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:01 2005CHROMAT_FILE: MSMg01no169_f13.g1 PHD_FILE: MSMg01no169_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTAGCATTGGTGGTGGAGGTAGGGTGGTCTTTGTCTCATAATGC
TTTGCCTGGACTGGTTTTTTTTTTAACCTTTCAAGTCCTTTGAATATAAA
TTACATTTTTTGGTTTGTGATTTTAAGGGATTGCTGTGTGTGAAAACTCT
GTGTCTGTCTCTATCATGTGTTTCTTTGGTTTCTTGTCTTTGTTCTATTC
TAGTTTGTTTGATTTTGTTTTATCTAATTTTATATTATTTGGAATTATAT
GCCTGTCTATTTTCAAATGTATTGACAGGGTGTGGATTTGGATGAGAGGG
GAAGTGTTTTTATTTTCCCCGAGCCAACCCCTTGGTATTTTGTTTTATTT
CTTAAGAAGATGGNGCAAAAAAAAAAAAAAACATTCTCTGGGGGGGGGTG
GTTACTATGATCGCTTAATCGATACTGCCCCCAAGTACCCCACCTACTCC
TACTGACCATTGTACCTCGCCGACGTATCCTGCTCCAAACAATCTTGCGC
TATTAAATTTTGTTCATTCCCCCCCAGTTTTTTGTTCCCTGCCCTTTTGA
ATGGTATATGTTGTTTTAAGTGATAAACATCCCGCCCGCATTTTCTCCCC
GTATTCTACTTATCCAATTACCAATACTCTACCCCTATAAACTTTTCACA
CCTCCCCCCAATTTTATTTTTCCG
TCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGACAGCCTGGACCATGTGAGACT
TAGACTAAACAAACAAATAAAACCCACGGAGATGTCACTCTTTCTATTTT
CTGTTTGGTTATGTTTAGCTTTTGTGACATTTTTTTTCTTCTTGCCATCT
TACCCTGTCTAGGTTGCTGTGACAGTGTACTGTACAGGGTTGATGATGCG
GTCTGAGCAGTGGAGTGTCGGGCTAGCGCTGGCTTTCACCAGCAGCTCTG
CAGAGAGGTGGCACGTCCTTGTGAGACTAGCAGTATGAGAACCAGTTCAA
GGTCACTCTTTTTGTTTAACACCCCCCTCTGTCCAAAAGAAAGAAAGAAA
GACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGAAAAAAAGA
AAGGGAGGGAGGGAGGGAGAGAGGGAGGNAGANNNNNTNNNNNNNNNNNN
NNTNNNNNTTTTTTGTTTTTTTTTTTTTGTTTTTTTTTTTTTTNNTTTTT
TNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTNTTT
TTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTGTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTT
TTGTTTTTTTTTGTGTTGTGGTTGTTGGTTGTTGGTTGGTTTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_f13.g1 MSMg01no169_f13.g1 CHROMAT_FILE:
MSMg01no169_f13.g1 PHD_FILE: MSMg01no169_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:01 2005
         (284 letters)



>mm_chr3_28071147_28071829
          Length = 683

 Score =  487 bits (252), Expect = e-142
 Identities = 276/284 (97%), Gaps = 1/284 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagacagcctggaccatgtgagacttagactaaacaaacaaataaaacccacggagatgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 483 aagacagcctggaccatgtgagacttagactaaacaaacaaataaaactcacggagatgt 424

                                                                       
Query: 61  cactctttctattttctgtttggttatgtttagcttttgtgacattttttttcttcttgc 120
           ||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 423 cactcttcctattttctgtttggttttgtttagcttttgtgaca-tttttttcttcttgc 365

                                                                       
Query: 121 catcttaccctgtctaggttgctgtgacagtgtactgtacagggttgatgatgcggtctg 180
           ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 364 catcttaccctgtttaggttgctgtgacagtgtactgtacagggttgacgatgcgggctg 305

                                                                       
Query: 181 agcagtggagtgtcgggctagcgctggctttcaccagcagctctgcagagaggtggcacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agcagtggagtgtcgggctagcgctggctttcaccagcagctctgcagagaggtggcacg 245

                                                       
Query: 241 tccttgtgagactagcagtatgagaaccagttcaaggtcactct 284
           ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tccctgtgagactagcagtatgagaaccagttcaaggtcactct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 683
Length adjustment: 9
Effective length of query: 275
Effective length of database: 674
Effective search space:   185350
Effective search space used:   185350
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)