Query= MSMg01no169_m18.b1 MSMg01no169_m18.b1 CHROMAT_FILE:
MSMg01no169_m18.b1 PHD_FILE: MSMg01no169_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:35 2005
(312 letters)
>mm_chr3_52699017_52699726
Length = 710
Score = 547 bits (283), Expect = e-160
Identities = 302/309 (97%), Gaps = 4/309 (1%)
Strand = Plus / Plus
Query: 4 tgaattcccctggaagacattgagctagtcggttgtaatgtcatggtggcgcttgcacta 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tgaattcccctggaagacattgagctagtcggttgtaatgtcatggtggcgcttgcactg 263
Query: 64 tattttcttgttgtattttccaaatcagctccaggtcaactcctccctccccat-tttct 122
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 264 tattttcttgttgtattttccaaatcagctccaggtcaactcctccctcccc-tctttct 322
Query: 123 cccttttcctccccagctctttcttctctttcgtttttgattttttttcttcctgtctga 182
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 323 cccttttcctccccagctctttcttctctttcctttttgatttttt--cttcctgtctga 380
Query: 183 tgtatttagtgactaccttggatgtgtaccagacagtaatattctatctactatctgggt 242
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 tgtatttagtgactaccttggatgtgtaccagacagtaatattctatctattatctgggt 440
Query: 243 ttaggctaagcacttaaatttgagacaatggcagatagtgttgagttgtttacacttagg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaggctaagcacttaaatttgagacaatggcagatagtgttgagttgtttacacttagg 500
Query: 303 gagaggaaa 311
|||||||||
Sbjct: 501 gagaggaaa 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 710
Length adjustment: 9
Effective length of query: 303
Effective length of database: 701
Effective search space: 212403
Effective search space used: 212403
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no169_m18.g1 MSMg01no169_m18.g1 CHROMAT_FILE:
MSMg01no169_m18.g1 PHD_FILE: MSMg01no169_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:35 2005
(351 letters)
>mm_chr3_52760140_52760893
Length = 754
Score = 619 bits (320), Expect = 0.0
Identities = 345/354 (97%), Gaps = 3/354 (0%)
Strand = Plus / Minus
Query: 1 ttccccttgaggacgctctggtgtctatagatgtgcttaagaacaagagttgtcttcaac 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ttccccttgagggcgctctggtgtctatagatgtgcttaagaacaagagttgtcttcaac 495
Query: 61 acgtagaactctggcccattcacttgcaggaactcccgagtgagcgttgcccggtggagg 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 494 acgtagaactctggcccattcacttgcaggaactccggagtgagcgttgcccggtggagg 435
Query: 121 agtgaacttggtgcactgcaccgacccagctgagattggagggaagcccagcctcaagct 180
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 434 agtgaacttggtgcactgctccgacccagctgagcttggagggaagcccagcctcaagct 375
Query: 181 agcggcgttgctcttgaccaagtgcaaccgcttcagcctgtgactctggtatgggcatct 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 agcggcattgctcttgaccaagtgcaaccgcttcagcctgtgactctggtatgggcatct 315
Query: 241 ctgagccgtgctccttgatgagagcgtggatgccacgctgcagcaatgaaggtaactgac 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 314 ctgagccgtgctccttgatgagagcgtgggtgccacgctgcagcaatgaaggtaactgac 255
Query: 301 -g--gggcccttctgaggctcggccccaacagcaaggctggaaagactgtgtct 351
| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgacgggcccttctgaggctcggccccaacagcaaggctggaaagactgtgtct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 754
Length adjustment: 9
Effective length of query: 342
Effective length of database: 745
Effective search space: 254790
Effective search space used: 254790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
