BAC Information

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BAC

Clone NameMSMg01-169P22
Chromosome3 (Build37)
Map Location 80,412,127 - 80,412,415
singlet/doubletsinglet
Overlap genenone
Upstream geneEtfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik, EG626797
Downstream geneGria2, Glrb, EG626841, Pdgfc, LOC229443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169P22.T7 (MSMg01no169_p22.b1)MSMg01-169P22.TJ (MSMg01no169_p22.g1)
ACCAG366701AG366702
length813722
length of high quality
(start - end)
104 (45 - 148)291 (73 - 363)
definitionCHROMAT_FILE: MSMg01no169_p22.b1 PHD_FILE: MSMg01no169_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:50 2005CHROMAT_FILE: MSMg01no169_p22.g1 PHD_FILE: MSMg01no169_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTGACTATAACTTGTCCAAAATTACAAAAGAAGAAGGAGAAGAAG
AAAGAAGAAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGG
AAGAAGAAGAAGAAGAGTAGGAGGAGGAGAAAAGAGAGAGGGAGGGGAGA
AGGGAAGGGGAGANGAGGGGGAGGGAGAGATAGGGGGAGGGTGGGGGGAG
GGATTTTTTTTTGTTGTTGTGTTGTTTTTGGTTGGTGTTTTTGCGCGACG
GTTAAAGATAGCGGGAAGAGTTTTTTTTTTTTGCGGCAGAGAAGAGCGCG
GGGGGGGGGGGGTTTTGAAATAAGGCCCGAAAAACCAAAAACCCCGGGTT
TTTTTTTTTGTTGTGTTGTGGTGTNTNTTTTAAAAATTTTTTATTTTTTA
AATGGGGGGGGTGTGGGGGGGTTTTTTTTTTTTTTTTTTATTTAGGGTTG
GGTTGAAGTGTTTTTAGGGTATTGTTTTTTGGTTTTGTGGTAGGTTGGTT
TTTTTTTTTTTTTTGATGAGTTTGTTTATGGTGTTTTTTTGGGTTTTATT
TTTTTTTTATGTTGTTTTTTTTTATGGATTTTATTTGTTTTGGGTGTTTT
TGTGGTTTTGTTTGTTTTTTTGGTAGAAGGTGTGTGGGTTTGTGGTTAAT
TTTTTTTGTTGTTTGGAGTTATTGTTGGTGTGTTTTTTTATAGTGTATTG
TGTGTGTGGGAGGTTGTTGTTAATTTTGTTTGGTGGTATGTTTTTGGTTG
TTTTGGGTTTTTG
TGATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAACATATATTATTGTAATCTACAGATGT
GATTTTAATGTATTCTTTTTGCATGACTCAATCTTAAAATATGGAAATAG
AAACCAGTGAAATGTTTATTTCAGGCTTCAAGGTCATGACATTTATTTAT
GTCATAATTTTCATTACTACTATTAATATTTTGTATTTTCAATGATGTAC
TCTCCACTGTAAAAATGAGTATTTCTGTTGTTATTATTGAAAATATAAAA
TGCCTGAACTGAAAGGATTATATTTTTATAGCTAATTAGTTTTATTTTCA
AACTGTCACGCTTTGGATTTTNCTCCCCCCCCCCCCATGGATTCCTAGTA
GAAGAAAGAGCTCCTACATCATTTAAAAAAGAAAAAAAAGTGCTTCTCTG
TAGGCGACAGAATAAGAACAAGGGTTTGACTATTATCAAGGGCACAAGTA
AGGAAAGGCACTGAGGCAAGCCAGAGAGGACAGGGAAGGTACAAAGTGAA
CACAGGAAAACCGAGTGGGTGGTCTGACATTAGCTCTCTCTTCCGTTCCT
TCCCATGAGCAATTGTTGCTGAACTACGAAATATTTTGACTAACAAGAGA
CATTTGTTAACTTCATGTAATAAAGCAGCCCATTAACAAAATGTCAGGGA
ATCAGTTACCAAGCTGACAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_p22.g1 MSMg01no169_p22.g1 CHROMAT_FILE:
MSMg01no169_p22.g1 PHD_FILE: MSMg01no169_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:50 2005
         (291 letters)



>mm_chr3_80411927_80412617
          Length = 691

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacatatattattgtaatctacagatgtgattttaatgtattctttttgcatgactcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacatatattattgtaatctacagatgtgattttaatgtattctttttgcatgactcaat 260

                                                                       
Query: 61  cttaaaatatggaaatagaaaccagtgaaatgtttatttcaggcttcaaggtcatgacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttaaaatatggaaatagaaaccagtgaaatgtttatttcaggcttcaaggtcatgacat 320

                                                                       
Query: 121 ttatttatgtcataattttcattactactattaatattttgtattttcaatgatgtactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatttatgtcataattttcattactactattaatattttgtattttcaatgatgtactc 380

                                                                       
Query: 181 tccactgtaaaaatgagtatttctgttgttattattgaaaatataaaatgcctgaactga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccactgtaaaaatgagtatttctgttgttattattgaaaatataaaatgcctgaactga 440

                                                            
Query: 241 aaggattatatttttatagctaattagttttattttcaaactgtcacgc 289
           |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 aaggattatatttttagagctaattagttttattttcaaactgtcacgc 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)