Query= MSMg01no170_l05.b1 MSMg01no170_l05.b1 CHROMAT_FILE:
MSMg01no170_l05.b1 PHD_FILE: MSMg01no170_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:43 2005
(271 letters)
>mm_chr3_146119149_146119820
Length = 672
Score = 487 bits (252), Expect = e-142
Identities = 264/268 (98%), Gaps = 1/268 (0%)
Strand = Plus / Minus
Query: 5 gaattccactgaacactgctaatcacttgctgtcatcccagtcaaagccacgcatctcct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gaattccactgaacactgctaatcacttgctgtcatcccagtcaaagccacgcatctcct 413
Query: 65 tcccactgatatgtgcatccttgtgtcatataatttgaccagtgagtctcatgtgacaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tcccactgatatgtgcatccttgtgtcatataatttgaccagtgagtctcatgtgacaac 353
Query: 125 cagctctctcagaatcacccaacgcacatgctaaaactgcatgtgc-tcagctctagccc 183
||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||
Sbjct: 352 cagctctctcagaatcacccaacgcacatgctaaaactgcaggtccctcagctctagccc 293
Query: 184 acaatcagtgaaccaatgtcaggaaattctaaataacaccgcacgtgatcccagggcaag 243
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 292 acaatcagtgaaccaatgtcaggaaattctaaataacaccgtacgtgatcccagggcaag 233
Query: 244 cttcagaaccattggtttatagagctta 271
||||||||||||||||||||||||||||
Sbjct: 232 cttcagaaccattggtttatagagctta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 672
Length adjustment: 9
Effective length of query: 262
Effective length of database: 663
Effective search space: 173706
Effective search space used: 173706
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no170_l05.g1 MSMg01no170_l05.g1 CHROMAT_FILE:
MSMg01no170_l05.g1 PHD_FILE: MSMg01no170_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:44 2005
(289 letters)
>mm_chr3_145973622_145974310
Length = 689
Score = 542 bits (280), Expect = e-158
Identities = 283/284 (99%)
Strand = Plus / Plus
Query: 4 agtttcccctagagagcaccctctgcagcttggcacaccctgggacactgtatttggctc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 agtttcccctagagagcaccctctgcagcttggcacaccctgggacactgtatttggctc 263
Query: 64 tatccaaagcacagaagccaagaggactgtctagcaggtttggggatgtcaaaggcttga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tatccaaagcacagaagccaagaggactgtctagcaggtttggggatgtcaaaggcttga 323
Query: 124 gtcagttcccaaaagtgcaggaaccaggaatagatgagtgttttctttgcatagccagat 183
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 324 gtcagttcccaaaagtgcaggaaccaggaatagatgagtgttttctctgcatagccagat 383
Query: 184 gtgctcaaaagagctggcaatcggtcggtcatgttagattaatccaaatacagtgaagaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgctcaaaagagctggcaatcggtcggtcatgttagattaatccaaatacagtgaagaa 443
Query: 244 gttgaagaagtgaagagcattcatttcaggagagactgggtatg 287
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gttgaagaagtgaagagcattcatttcaggagagactgggtatg 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
