BAC Information

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BAC

Clone NameMSMg01-171H21
Chromosome3 (Build37)
Map Location 67,191,737 - 67,192,026
singlet/doubletsinglet
Overlap geneMlf1
Upstream geneLOC625115, Shox2, Rsrc1
Downstream geneGfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412, EG208426, EG545531, LOC631379
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171H21.T7 (MSMg01no171_h21.b1)MSMg01-171H21.TJ (MSMg01no171_h21.g1)
ACCAG367718AG367719
length757746
length of high quality
(start - end)		323 (46 - 368)292 (72 - 363)
definitionCHROMAT_FILE: MSMg01no171_h21.b1 PHD_FILE: MSMg01no171_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:44 2005CHROMAT_FILE: MSMg01no171_h21.g1 PHD_FILE: MSMg01no171_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACTGAGGAATACTGAATGGCTGAGAAGCACCTAAAAAAATGT
TCAACATCCTTAGTCATCAAGGAAATGCCAATCAAAACTACCCTGAGATT
CTACCTCACACCAGTCAGAATGACTAAGATCAAAAACTCAGGTAACGCAG
ATGCTGGTGAAGATATGGAGAAAGAGTCCTCCCATTGCTAGTAGGATTGC
AAGCTGGTACAGCCACTCTGGAAATCAGTTTGGCCGTTCCTCAGAAAATT
GGACATAGTACTACCTAAAGACCCAGCAATACCACTCCTGGGCATATACT
CAGAAGATACTCCAACATGTATTTTTGACACCCCCCCCCTTATGTCATAG
CAGCCTTATTTATAATGCCAGAAGGCGGAAAGACCCGGATGTCCCTCAAC
AGATGAATGGATATTGAAAATGTGGTACATTTACACAATGGAGTACTACT
CAGCTATTAAAAACAATGAATTTATGAAATTCTTAGGCAAATGGATGGAT
CTATCATCCTGAGTTAAGTAACCCAATCACAAAAGAACACACATGATATG
AACTCACTGATATGTAGATATCAGCCCAGAAACTTATACTACCCAAGATA
TAATTTGCCAACCACATGAAACTCACGCAGAAGGAAGACCATAGTGTGGA
TACTTCTTATCCTGTTAGAAGGGGGGGAACTAAACCCCATGTAAGGAGTT
ACACAGA

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGAACTGGTCGACATGTTTACTGAATT
CTAACTATATTTGAATTGCCAAGATCCACTTTAATAGGAATGCCTATGGA
CTTACTATTCTATAATTGCCATTCCTGAGGATAAAAAATAAGAGAGGTGT
AACCCAAAAGTTACCACACATATGTAGATGTCACTTTTTCTTTTATTGAA
TGTTCTCCCATCCTGATGAGAATAGGCAGTTATAGAAGTTGTGGCTTGAA
ACTGTTTGACCCAGGGAGTGGCAACAAGTCCGGCCTTGTTGGAGTAGGTG
TGGCCTTATTGTTTGTATTATACCACCCCCCCCCTGGGCATAGAGTCTTC
TAGCTGCCTTAGGATCAAGATGTAGAAATGTAACATGCTTCCCACCAGGA
TGATAATGGACTGAACCTCCAGCCCCAATTAAATGTTGTCCTTTATAATA
GTTGCCTTGGTCATGGTGTCCATTCACAGCAATAAAACCCTAATTCAGAA
GTTGTTACCAGGGAATGGGATATTGCTGTGATAGGCCTGACCATGGTTTT
GTTTGGAGGAATGTAGATTTCGTAATTCGATTCTCCTTATTTCCGCCACC
ATCTTTCCGTCCTCTTCGTTTCGCTTCCTCCTATTACCCCCCTTTTTTTT
CTTTTTCACACTTTTTCTATCATATCTATCTTTTTCACTTTCCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_h21.g1 MSMg01no171_h21.g1 CHROMAT_FILE:
MSMg01no171_h21.g1 PHD_FILE: MSMg01no171_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:44 2005
         (292 letters)



>mm_chr3_67191605_67192296
          Length = 692

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgaactggtcgacatgtttactgaattctaactatatttgaattgccaagatccactt 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 422 tttgaactggtcgacatgtttactgaattctaactatatctgaattgccaagatccactt 363

                                                                       
Query: 61  taataggaatgcctatggacttactattctataattgccattcctgaggataaaaaataa 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 taataggaatgcctatggagttactattctataattgccattcctgaggataaaaaataa 303

                                                                       
Query: 121 gagaggtgtaacccaaaagttaccacacatatgtagatgtcactttttcttttattgaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gagaggtgtaacccaaaagttaccacacatatgtagatgtcactttttcttttattgaat 243

                                                                       
Query: 181 gttctcccatcctgatgagaataggcagttatagaagttgtggcttgaaactgtttgacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gttctcccatcctgatgagaataggcagttatagaagttgtggcttgaaactgtttgacc 183

                                                             
Query: 241 cagggagtggcaacaagtccggccttgttggagtaggtgtggccttattg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 cagggagtggcaacaagtccggccttgttggagtaggtgtggccttattg 133


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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