BAC Information

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BAC

Clone NameMSMg01-171I16
Chromosome3 (Build37)
Map Location 150,218,248 - 150,348,372
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040620, LOC100040633, LOC100040455, LOC100040463, LOC623554
Downstream geneEltd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171I16.T7 (MSMg01no171_i16.b1)MSMg01-171I16.TJ (MSMg01no171_i16.g1)
ACCAG367751AG367752
length743739
length of high quality
(start - end)		279 (45 - 323)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no171_i16.b1 PHD_FILE: MSMg01no171_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:47 2005CHROMAT_FILE: MSMg01no171_i16.g1 PHD_FILE: MSMg01no171_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,218,248 - 150,218,508)(150,348,085 - 150,348,372)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTACAAGGAAAAGTTCATTAACACTTTCTAAATCTTAGTCAATCTC
AGTCATAGATGTCAATAAGGAAAAAATATTCTAATGTAAAAGCCTCAGAC
TGTTCTTTCTGCCCACATGGTACATAATAATTTGTTCAATATGTGTTGCC
TTGACTGTTTACTATTTATAAACTCCATAATGAACTACAGCATTTTCTGT
AGAATGTAGATACTGTGTCAAGTGGCCCCAATCACTGTGTTTTGTTGTGG
TGGTGGTGGTGTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNA
ATTANNTTTTTTTCCNANACAAAACCCCAAANTTTTTTTTTTNTTTTNTT
TTTTTTTTCCCAAAAAATNTATNAAAAAAAGGTTGGGGGGGGGGGTTTTT
TTTTTTGGNTTTTTTTTGTTTTTTTGTGTGTTTTTTTTTTTTTTGTGTTT
GTTGTTTTTTTTTTTTTTTTTTNGTTTTTTTTTTGGTTGTTTTTTTTTTT
TTTTTNGGGGTTTTTTAGTTTTTTTTTTTTTTTTTTGGTTTTGGTGTTTG
TTTGGTGTTTGTTTTTTTTTTTTGTGGGTTTTTTTTTTTTTTTTTGGTTT
TTTTGTGTTTTTTTTGTTTGTGGTGTTTTTTTTGTGTGCTTTTTCCTTCC
CCCCTTTTTTCTTCCACCTTTTACCCCCCTTTTTTTCTTTTTT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGTCTTATCCTGTTTCTGGATTCAG
CTGCCGTTTCCAGGGCATAATATCCCCAAAGAACACAGTGAAAGTATCAA
TGTATCTAATAAAAATAATCCAGAAGTTCAAAGCCCAAGTCTTTCAACAG
ATAAACATAAATACTTAGCTCTGGGCACAAAAATAGAAGGAGGTTGTCAT
GATAAACATAGGAAGGGCTGCATTTGCCATCTCAAAGGTTCTAGGAGCAT
GTGGGTTAACTGGTAAAGCTCTTTTTTATTTGAGTAAGAGACAAAAGGCC
TTCACCCTATTAGTANCTTATACCATNTACTTAATCCTCTATATTCCTGT
GTTGGCACTTCACTTTGCAGCTACAAAACATACAAAAAGAAGTTCATAGA
ATGTTCCAATTATTTTTCTTCTTGCAGCCCCATTGTAACCTGGTATTATG
GCCAAAGAAATCTTACATTACTTTCCTCCGCTTAAGTAAGCTATGGTTAC
TTTCTGTTATCTGTAAAGCATACCTCTTTATTGAAGAAATTGTTTAGGCT
CTGGTGGGTGTTGTCACATGCATCATCTGCATTCTAAAATTAATTTAAGT
CTAATTTGTTCTGTGTAATTGAATTATTGGAGAATGGATTTTGGGCCTTT
GTTTTGCTATAATAATAATTTGGTTTTTTTTGTCCCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_i16.b1 MSMg01no171_i16.b1 CHROMAT_FILE:
MSMg01no171_i16.b1 PHD_FILE: MSMg01no171_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:47 2005
         (279 letters)



>mm_chr3_150218045_150218723
          Length = 679

 Score =  497 bits (257), Expect = e-145
 Identities = 260/261 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttacaaggaaaagttcattaacactttctaaatcttagtcaatctcagtcata 63
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 204 ggaattcttacaaggaaaagttcattaacactttctaaatcgtagtcaatctcagtcata 263

                                                                       
Query: 64  gatgtcaataaggaaaaaatattctaatgtaaaagcctcagactgttctttctgcccaca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gatgtcaataaggaaaaaatattctaatgtaaaagcctcagactgttctttctgcccaca 323

                                                                       
Query: 124 tggtacataataatttgttcaatatgtgttgccttgactgtttactatttataaactcca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tggtacataataatttgttcaatatgtgttgccttgactgtttactatttataaactcca 383

                                                                       
Query: 184 taatgaactacagcattttctgtagaatgtagatactgtgtcaagtggccccaatcactg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taatgaactacagcattttctgtagaatgtagatactgtgtcaagtggccccaatcactg 443

                                
Query: 244 tgttttgttgtggtggtggtg 264
           |||||||||||||||||||||
Sbjct: 444 tgttttgttgtggtggtggtg 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no171_i16.g1 MSMg01no171_i16.g1 CHROMAT_FILE:
MSMg01no171_i16.g1 PHD_FILE: MSMg01no171_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:47 2005
         (290 letters)



>mm_chr3_150347884_150348573
          Length = 690

 Score =  518 bits (268), Expect = e-151
 Identities = 283/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   agtcttatcctgtttctggattcagctgccgtttccagggcataatatccccaaagaaca 61
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 489 agtcttatcctgtttctggattcagctgccgtttccagggcataatatcagcaaagaaca 430

                                                                       
Query: 62  cagtgaaagtatcaatgtatctaataaaaataatccagaagttcaaagcccaagtctttc 121
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 429 cagtgaaagtatcaatgtatctaataaaaataatccagaagttcaaagaccaagtctttc 370

                                                                       
Query: 122 aacagataaacataaatacttagctctgggcacaaaaatagaaggaggttgtcatgataa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aacagataaacataaatacttagctctgggcacaaaaatagaaggaggttgtcatgataa 310

                                                                       
Query: 182 acataggaagggctgcatttgccatctcaaaggttctaggagcatgtgggttaactggta 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 acataggaagggctgcatttgccatctcaaaggttctaggagcatgtgggttaactggta 250

                                                           
Query: 242 aagctcttttttatttgagtaagagacaaaaggccttcaccctattag 289
           ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 249 aagttcttttttatttgagtaagagacaaaaggtcttcaccctattag 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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