BAC Information

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BAC

Clone NameMSMg01-171M10
Chromosome3 (Build37)
Map Location 36,072,590 - 36,072,835
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e
Downstream geneGpr103, Anxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171M10.T7 (MSMg01no171_m10.b1)MSMg01-171M10.TJ (MSMg01no171_m10.g1)
ACCAG367906AG367907
length737734
length of high quality
(start - end)
274 (45 - 318)246 (75 - 320)
definitionCHROMAT_FILE: MSMg01no171_m10.b1 PHD_FILE: MSMg01no171_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:04 2005CHROMAT_FILE: MSMg01no171_m10.g1 PHD_FILE: MSMg01no171_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACTGAGGAATCATGAATGGCTGAGAATCACCTAAAGAAATGTT
CCACATCCTTAGTCATCAGGCCAAATGCAAATCAAAATGACCCTGAGATT
CCATCTCACACCAGTCAGAATGGCTAAGATAAAAAAGTCAGGTGACAGCA
GATGCTGGCAAGGATGAGGAGAAAGAGAAACACTCCTCCATTGCTAGTGG
GATTGCAAGCTGGTACAACCACTCTGGAAATCAGTCTGCTGCTGGTTCCT
CAGAAAATTGGACATAGTTAATTGATGATCCAGTTATACCATTTCTGGGT
GCATACCTTTAATANGTTCCAANACATTACCCGGACAAATGCTCATAGAA
GCCTTATTTATAATACCCAGAAGAATGAAAAGAACCCAGATGTCCCTCAA
CAGAGGAATGGATTTAGAAAAAAATGTGGTACATTTACTCAATGGAGTAC
TACTCAGCTATTAAAAACAATGATTTCATGAAATTCACAGGCAGATGGGT
GGATCTAGAAAACATCTTCCTGAGTGATGTAACCCAGTCACAAAAGAACA
CATATGCCATGCACTCACTGATAAGCCACCAAGCATAAAGCTCAGGATAC
CCTCCATATTTTTCACAGACGATATGATTTTCAAGACTATTGCATACCCA
AGTGTGTATCCCTCCGTCCCGCTTATATTTGTGATTN
TCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCGGGAAACAATGGGGATTTCTGTT
GAGTTGAGAATAGGCTTGTTGTCCTGTGTTGAGTGGCACCTCAGCCCATG
TCTGTTCCTCCCTATCTGGCCCCATCGGTCATGGTTGGCCTAAATGTTGC
TGAAGACTCTGGAGGGTCCTTGCTTCTCAGGTCTGGAGGCCCAGTCACCA
AGCCTCTGTATCTGGAAACCAAGGCAGGAACACTCATCTGGCTGACTTTC
TTGCCTGTGTGCTTGTTGATCTTATTATACACACTCTGCAGCCTTGGCAA
CTCTTATTTTAGATGGGCTCCGANACTATGACCGGGNATGAGTTATCTCT
GCTCATTGGGGAGCTTCATTTAAAACNTAAAGAAAATAGGGAGTCGGGCT
AGTATAAAAGTCATTACTTTTTACCATAAGTATATCTGGTTCCCCTACCA
GATGTTATTAATGTGCAAGCATGATACTACTCTCATGATGTCTACAAGTC
CTATGAAAATTCCAGCCTACTACTTATGCATCGGTAGTTGGAGAGGCCAG
ACCTCTGGATTCGGAGTACTATGTTATTTTTTACCCCCCCCGCCAAAACC
TTTTCTTTTTTTTAAATATATTTGGAAGTTGAACAGACCGACTATTTCTT
CTTTCTTCCTGTTTTTTTTTTCTTTTTTTAACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_m10.g1 MSMg01no171_m10.g1 CHROMAT_FILE:
MSMg01no171_m10.g1 PHD_FILE: MSMg01no171_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:04 2005
         (246 letters)



>mm_chr3_36072390_36073035
          Length = 646

 Score =  445 bits (230), Expect = e-129
 Identities = 242/246 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccgggaaacaatggggatttctgttgagttgagaataggcttgttgtcctgtgttgagt 60
           |||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||
Sbjct: 201 tccgggaaacaatggggatttctgttgagttgagaataggcttggtgtggtgtgttgagt 260

                                                                       
Query: 61  ggcacctcagcccatgtctgttcctccctatctggccccatcggtcatggttggcctaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 ggcacctcagcccatgtctgttcctccctatctggccccatcggtcatgattggcctaaa 320

                                                                       
Query: 121 tgttgctgaagactctggagggtccttgcttctcaggtctggaggcccagtcaccaagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttgctgaagactctggagggtccttgcttctcaggtctggaggcccagtcaccaagcc 380

                                                                       
Query: 181 tctgtatctggaaaccaaggcaggaacactcatctggctgactttcttgcctgtgtgctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgtatctggaaaccaaggcaggaacactcatctggctgactttcttgcctgtgtgctt 440

                 
Query: 241 gttgat 246
           ||||||
Sbjct: 441 gttgat 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)