Query= MSMg01no172_l08.b1 MSMg01no172_l08.b1 CHROMAT_FILE:
MSMg01no172_l08.b1 PHD_FILE: MSMg01no172_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:14 2005
(251 letters)
>mm_chr3_73809115_73809764
Length = 650
Score = 424 bits (219), Expect = e-123
Identities = 243/251 (96%), Gaps = 1/251 (0%)
Strand = Plus / Plus
Query: 1 caacaaattatgtaaattactgaataaataagtaacatcttttgaaaacaccattgtggg 60
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 201 caacaaattatgtaaattactgaataaataagtaacatcttttgaaaagaatattgtggg 260
Query: 61 gatatggagagtgtttgactgtgaaaataggggcaagtatgatcacatgtctccataact 120
||||||| ||| |||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 261 gatatggggagggtttgactgtgaaaat-ggggcaagtatgatcacatgtcaccataact 319
Query: 121 gtgtagtgtatggtattctcatacataaatataaattaaaagacaaacaaaaatctcaaa 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtgtagtgtatggtattctcaaacataaatataaattaaaagacaaacaaaaatctcaaa 379
Query: 181 tatgcataccttgagccatcataactgctttgttttcacattcattctgaaatgtatata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tatgcataccttgagccatcataactgctttgttttcacattcattctgaaatgtatata 439
Query: 241 tctcattccat 251
|||||||||||
Sbjct: 440 tctcattccat 450
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 650
Length adjustment: 9
Effective length of query: 242
Effective length of database: 641
Effective search space: 155122
Effective search space used: 155122
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no172_l08.g1 MSMg01no172_l08.g1 CHROMAT_FILE:
MSMg01no172_l08.g1 PHD_FILE: MSMg01no172_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:14 2005
(289 letters)
>mm_chr3_73925794_73926482
Length = 689
Score = 551 bits (285), Expect = e-161
Identities = 288/289 (99%)
Strand = Plus / Minus
Query: 1 caatatgtaatattcacaatgtgagatatttttaattttatttattttctatacagtatt 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 caatgtgtaatattcacaatgtgagatatttttaattttatttattttctatacagtatt 478
Query: 61 tattctacaaggtctccttgttcccttgtgtatatgaagatgcccattctcaattgcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tattctacaaggtctccttgttcccttgtgtatatgaagatgcccattctcaattgcttt 418
Query: 121 gtgagtaaaagttttatatttttacaagcccagttattaccagctaacatcaggatcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gtgagtaaaagttttatatttttacaagcccagttattaccagctaacatcaggatcaaa 358
Query: 181 tcaaaaccaatttcactagtgtatgttataatgagcattgcctgcaaactacaaataatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tcaaaaccaatttcactagtgtatgttataatgagcattgcctgcaaactacaaataatg 298
Query: 241 tatcatatttcaactgaaatttactatttcacatatattcaaatacacc 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tatcatatttcaactgaaatttactatttcacatatattcaaatacacc 249
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
