BAC Information

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BAC

Clone NameMSMg01-172M08
Chromosome3 (Build37)
Map Location 7,280,035 - 7,280,324
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1, EG667801
Downstream genePkia, LOC667807, 3110050N22Rik, Il7, LOC620822, LOC633072
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172M08.T7 (MSMg01no172_m08.b1)MSMg01-172M08.TJ (MSMg01no172_m08.g1)
ACCAG368582AG368583
length721721
length of high quality
(start - end)
318 (45 - 362)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no172_m08.b1 PHD_FILE: MSMg01no172_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:18 2005CHROMAT_FILE: MSMg01no172_m08.g1 PHD_FILE: MSMg01no172_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCATCGGGTTGAGGGATCAACTGAGTCTACCCCATGGCACTTGAT
GACTCAGTATGTTGAATATTTCTTTAGGTGCTTCTCAGCCATTTGAGATT
CTTCAGATGAGAATTCTTTGTTTAGCTTTGCATTCCATTTTTAATAGGGT
TATTTGGTTCTCTGGCATCTAACTTCTTGAGGTCTTTGTATATATTGGAT
ATTAGCCCTTTATTGGATGGAAAGTTGGTAAAGATCTTTTCCCAATATGT
TGGTAGCCATTTTGTTTTATTGACAGTGTCCTTTGCCTTACAGAAGCTTT
GCAATTTTATGTTTTCCCCTCCCCCCCCTCTTGATCTTAGAGCATAAGCT
ATTTGTGTTCTGTTCAGGAAATTCATGCCTGTGCCCATGTGATCAAGGCT
CTTTCCCACTTTCATTTCTATTAGTCTCAGTGTATCTGGTTTTATGTGGA
AGTCCTTGATCCATTTGGACTTGAGCTTTGTACCTGGAGATAAGAATGGA
TCGATTTGCATTATTCTACATGCTAACCACCACTTGAACTGGCTCCATTT
GTTGAAAATCCTTTCCCCCCCCCCCCACTGGATGTTTTTAGTCTCTTGCC
AAAGACCAAGGTAATTGTACGTGCGTGGCTCCATTTCTTGGGTGTTTATC
TCTATCTCCGTTACTCTATTN
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAAAAGGATTTTCTAGAGTTCCTGG
AGGACTACAACATCAAGGAAAACCGATAAAATTCCCCATGCTTTTTCTTA
GGGACCGGATCTCTTGTTTCTCTTTATTTTTCAAAAGCTATTGGTCTTTT
AGATAGCCACCTCATATAATTCTCATCAATGTAGGAAGCCTACACTTTTT
ATAAGCTTCTGAGGATGCCTGCAATTATCACATTTCTTTGAATATCAATG
TATCACAAGGACATGTAATTAAGTGTGCTGTGTGAAAAGCTAGAGGATCT
TGTCATTTGGTTTATGGAACACACTCACTAAGGATGCTCCACACCTCTTA
ATGCACCTTCCCTCCCACTCCACATATTTCAGCATTATCATCTCCCATCT
CTACAGTTTCAGTAACTAAAAACAAATGCTATTTAGGTTTATAAGTTACT
GGAATGTTTAATATATCTAAATATAATTGTATAAATTGTGTAACTTTCTC
TCAAAATGCATTTAGATACTAATACTATGCATAGTTTTTTCATTAAATAA
AGAGGATGCATTTATTTAGTTCTAACAGAATCATGTTAATAATTTCTGAC
AGGATTATAACTAACGAGTGTTTACATTTTGAATTTAATAATACTATAAC
AACTTGCTTTACAACGTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_m08.g1 MSMg01no172_m08.g1 CHROMAT_FILE:
MSMg01no172_m08.g1 PHD_FILE: MSMg01no172_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:19 2005
         (290 letters)



>mm_chr3_7279835_7280524
          Length = 690

 Score =  514 bits (266), Expect = e-150
 Identities = 284/290 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaaaggattttctagagttcctggaggactacaacatcaaggaaaaccgataaaattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 agaaaaggattttctagagttcctggaggactacaacatcaaggaaaaaagataaaattc 260

                                                                       
Query: 61  cccatgctttttcttagggaccggatctcttgtttctctttatttttcaaaagctattgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccatgctttttcttagggaccggatctcttgtttctctttatttttcaaaagctattgg 320

                                                                       
Query: 121 tcttttagatagccacctcatataattctcatcaatgtaggaagcctacactttttataa 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttttagatagccacctcatacaattctcatcaatgtaggaagcctacactttttataa 380

                                                                       
Query: 181 gcttctgaggatgcctgcaattatcacatttctttgaatatcaatgtatcacaaggacat 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 gcttctgaggatgcctgcaattatcacatttctttgaatatcaatatatcacaaggacat 440

                                                             
Query: 241 gtaattaagtgtgctgtgtgaaaagctagaggatcttgtcatttggttta 290
           ||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 441 gtaattaagtgtgctatgtgaaaagctagacgatcttgtcatttggttta 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)