BAC Information

Click to search

BAC

Clone NameMSMg01-172N17
Chromosome3 (Build37)
Map Location 26,978,850 - 26,979,159
singlet/doubletsinglet
Overlap genenone
Upstream geneNlgn1, LOC229152, Spata16, LOC665258
Downstream geneEct2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b, E030011K20Rik, Pld1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172N17.T7 (MSMg01no172_n17.b1)MSMg01-172N17.TJ (MSMg01no172_n17.g1)
ACCAG368640AG368641
length700748
length of high quality
(start - end)
310 (38 - 347)289 (67 - 355)
definitionCHROMAT_FILE: MSMg01no172_n17.b1 PHD_FILE: MSMg01no172_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:24 2005CHROMAT_FILE: MSMg01no172_n17.g1 PHD_FILE: MSMg01no172_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGT
TCATCAGTCTCTACCCATTGAGCCATCTTGCCAGCAGCCCTCCCTCTACC
CACTTTCCTTTACATTTCTTTTAGCATATATTTATGAAAAACACTATAAG
GACTGTTCTGAAATATGGTGGGAAAACAAATACATTTATCACAAATGCCT
ATAGACCTAGCTTAAAATAACCCAAATTAAAATTAATCTTGAACATCACT
TAGCTGTGTTCTCATGATTATGAAGGCCCAGGGTTTTGCATTGCTTAAGG
ACATCGAGATGACTTCTTTATTATTGTGCTGAAGCGTGATTAAAGCTTTA
GTGATCCTAAGCANAGCCCTCTGGTAAGAGTCCCTCTTTGCTGTAGCCCC
CCTGAAAAAAAAAAAAATTCGGGGGGTGGGCCCTTTCCCCTTTATTCTAC
TTCCTCCTTCTCTTCCTTCCTTTTTTTCCTCCTCCTTTTTATTTTCCTTT
TCCCCTTTTCTTTTTCGTCCTTTTTCACCTTACCCTTTTTTTTCCCCCCC
CTTTTTTTTCCCTCTCATTTTTCTTCTCCTTCAATTTTTTCCCATTTATC
TTTTCTCCCCTCCTCTCCCCTCTCTTTTTTTCTTTCCTCCCTCCTTCTTT
TTCTCCCCTTCCTTTTTTTTTCTCTCTTCTTTTCCCTTTCCCTCTCCTTT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCTGAGAAACACC
TGAAAAAATGTTCAGCCTCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAATATTGTACATAGTACTACCGGAGGATCCAGCAATACC
TCTCCTTTTTTTATACCCCCCCCCCGTTCCAANTGGTAATAAAGACACAT
GCTACACCACCCCCATAGCAACAGTATCTATAATAGCCGGAAGCGGCAAA
GAACCTAGATGCCCCTCATCAGAGGTATGTATACAGACCATGCGGTACTT
TTACACCATGTAATACTACTCAGCTATCACAAACAATGAACTTATGAAAC
CCCTAGGCAAATGTACGGACCTGTAGGGTATCATCTTGAGTGATTTATCC
CTCTCCTCACCCGATTTTTTTTGTTCCCTATTTCCCTGATCCCGTTTCTT
TATTTTTTATTCCCTATTTTTTTCATTTTTCCCTCTTTTCTCTCCCCCTC
TCCTCTTTCCTCCCTTTCCCCCACCTCCTTTCCCTTCTTTTTTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_n17.b1 MSMg01no172_n17.b1 CHROMAT_FILE:
MSMg01no172_n17.b1 PHD_FILE: MSMg01no172_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:24 2005
         (310 letters)



>mm_chr3_26978646_26979360
          Length = 715

 Score =  514 bits (266), Expect = e-150
 Identities = 299/310 (96%), Gaps = 5/310 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagttcatcagtctctacccattgagccatcttgccagcagccctccctctaccc 64
           |||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 205 gaattcagatcatcagtctctacccattgagccatcttgccagcaatcctccctctaccc 264

                                                                       
Query: 65  actttcctttacatttcttt-tagcatatatttatgaaaaacactataaggactgttctg 123
           |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actttcctttacatttttttatagcatatatttatgaaaaacactataaggactgttctg 324

                                                                       
Query: 124 aaatatggtgggaaaacaaatacatttatcacaaatgcctatagacctagcttaaaataa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaatatggtgggaaaacaaatacatttatcacaaatgcctatagacctagcttaaaataa 384

                                                                       
Query: 184 cccaaattaaaattaatcttgaacatcacttagctgtgttctcatgattatgaagg-ccc 242
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 cccaaattaaaattaatcttgaacatcacttagctgtgttctcatgattatgaaggtccc 444

                                                                       
Query: 243 agggttttgcattgcttaaggacatcgagatga-cttct-ttattattgtgctg-aagcg 299
           ||||||||||||||||||||||||||||||||| | ||  |||||||||||||| |||||
Sbjct: 445 agggttttgcattgcttaaggacatcgagatgaacatcaattattattgtgctgtaagcg 504

                     
Query: 300 tgattaaagc 309
           ||||||||||
Sbjct: 505 tgattaaagc 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 715
Length adjustment: 9
Effective length of query: 301
Effective length of database: 706
Effective search space:   212506
Effective search space used:   212506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)