BAC Information

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BAC

Clone NameMSMg01-172O08
Chromosome3 (Build37)
Map Location 156,507,898 - 156,622,429
singlet/doubletdoublet
Overlap geneNegr1
Upstream geneLOC624519, LOC100040901, 4930570G19Rik, LOC100041152, LOC668853
Downstream geneLOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172O08.T7 (MSMg01no172_o08.b1)MSMg01-172O08.TJ (MSMg01no172_o08.g1)
ACCAG368668AG368669
length721722
length of high quality
(start - end)
312 (44 - 355)287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no172_o08.b1 PHD_FILE: MSMg01no172_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:27 2005CHROMAT_FILE: MSMg01no172_o08.g1 PHD_FILE: MSMg01no172_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,507,898 - 156,508,204)(156,622,144 - 156,622,429)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATGGTACCAGAATTAAAATCAGAGTCCCTGTCTTCAGATTTAACTA
TGGACTTACTTTATAAAACCTGGTGTTAAAGTCCTACTTCTCTGTAGTTG
TACATTAGACAAAATGCGGTTATGTAGTTATCAAAATCCACAGAAGATGA
AATAGCAGGACATGGTGTGACCAAAAGATACTGAGGTTCAGAGTCTTAGA
AACCTTCATCTTCACATCTAACCCAATTGACAAAATTTGCATCTTTTTTG
TCACTTCATTTGTTTTTATTATTACTATGTTTGAAAAGATTTAGCTTTTC
CCTATTTTAGTCATGCCCTGACGNACACCGTTCTATCTCCAACACTCTGG
TTTACTGGGAAACACCCATGAAAACACGAATGTACCCATTTCCGTGTTAT
CTATACTCACTTGTTCACAGGGAGTGACTCAGTTTCAATGTGTGCAAGCA
TGGGCTCCCATACCATACCAATTGTGTGCTTGAAGTTGACTGATCTTGGT
GTGAGGCTGCTCATTGTATGGCTGCTGATATCCACTGGAGCGTTCCCAAA
GACAGGATACTCATGATTTTAATGCCAAACTCTGGATGGAAGGTGAACAT
ACACGTGCACCTACATATGTTGAAGCTCATTCCCTTCATGTTAAGGCTGT
ACCCAGACCTCCACTGTTTAT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAATTCCCAAGATGTTTTTAGACTCAG
AACTAAATATTTCTACGTCAGATAATAGATAGGAAATATACACATCTTCT
AGGAGAGATATATGCAAACATATTCACAAACAGTAGATAATTGTCTCTGA
ATCATCTACTCTTGTGCCCTTTCATCTTGCATAGAAGCAATTGTGATAGG
TAATAGGAGTTGGGCTATAATTAAACTTTTAATATTTAGGGATTGTTTGC
TTTTCTGTGAAAAAATCAAACATTTTATTTCAAGGCTGATTATTGCTATA
AAAGGTGATTNGTATTGCCCCTGCCAGCTCTTATATGTTCTCTCTGCTGT
CAACCTTCATCCTCCCTCCCCTGACACATTTATTTCCTACCATCTGATAT
CTCAGCCTACGATACAAGGACATGCAACCTAAATTTTAGAAAACCTACAG
CTTGGGTTTGCAGGCTGTGTTTTGTTTCTTCTTCAATATTTCTAAAAATG
CTATTTCCTTATGAAAAGGATGAACAGATAAAGCGTGGAGAAAATTGTCA
TAATGATAGCAGACGTACTCCTGCCCACGCTCTGTTATAGATTTATGGCC
CACGCAGACTATTTTGCCATCTGGGCCAAAGTCATATGTTCTCTGGAAAT
ATTTTGGTATAGTATTGTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_o08.b1 MSMg01no172_o08.b1 CHROMAT_FILE:
MSMg01no172_o08.b1 PHD_FILE: MSMg01no172_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:27 2005
         (312 letters)



>mm_chr3_156507694_156508405
          Length = 712

 Score =  586 bits (303), Expect = e-172
 Identities = 306/307 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatggtaccagaattaaaatcagagtccctgtcttcagatttaactatggactt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatggtaccagaattaaaatcagagtccctgtcttcagatttaactatggactt 264

                                                                       
Query: 65  actttataaaacctggtgttaaagtcctacttctctgtagttgtacattagacaaaatgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actttataaaacctggtgttaaagtcctacttctctgtagttgtacattagacaaaatgc 324

                                                                       
Query: 125 ggttatgtagttatcaaaatccacagaagatgaaatagcaggacatggtgtgaccaaaag 184
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgttatgtagttatcaaaatccacagaagatgaaatagcaggacatggtgtgaccaaaag 384

                                                                       
Query: 185 atactgaggttcagagtcttagaaaccttcatcttcacatctaacccaattgacaaaatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atactgaggttcagagtcttagaaaccttcatcttcacatctaacccaattgacaaaatt 444

                                                                       
Query: 245 tgcatcttttttgtcacttcatttgtttttattattactatgtttgaaaagatttagctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgcatcttttttgtcacttcatttgtttttattattactatgtttgaaaagatttagctt 504

                  
Query: 305 ttcccta 311
           |||||||
Sbjct: 505 ttcccta 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no172_o08.g1 MSMg01no172_o08.g1 CHROMAT_FILE:
MSMg01no172_o08.g1 PHD_FILE: MSMg01no172_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:27 2005
         (287 letters)



>mm_chr3_156621944_156622630
          Length = 687

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattcccaagatgtttttagactcagaactaaatatttctacgtcagataatagatagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aaattcccaagatgtttttagactcagaactaaatatttctacgtcagataatagatagg 427

                                                                       
Query: 61  aaatatacacatcttctaggagagatatatgcaaacatattcacaaacagtagataattg 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aaatatacatatcttctaggagagatatatgcaaacatattcacaaacagtagataattg 367

                                                                       
Query: 121 tctctgaatcatctactcttgtgccctttcatcttgcatagaagcaattgtgataggtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 366 tctctgaatcatctactcttgtgccctttcatcttgcatagaagcaactgtgataggtaa 307

                                                                       
Query: 181 taggagttgggctataattaaacttttaatatttagggattgtttgcttttctgtgaaaa 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 taggagttggggtataattaaacttttaatatttagggattgtttgcttttctgtgaaaa 247

                                                         
Query: 241 aatcaaacattttatttcaaggctgattattgctataaaaggtgat 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aatcaaacattttatttcaaggctgattattgctataaaaggtgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)