Query= MSMg01no173_b08.b1 MSMg01no173_b08.b1 CHROMAT_FILE:
MSMg01no173_b08.b1 PHD_FILE: MSMg01no173_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:41 2005
(683 letters)
>mm_chr3_24975638_24976717
Length = 1080
Score = 1232 bits (637), Expect = 0.0
Identities = 665/679 (97%), Gaps = 10/679 (1%)
Strand = Plus / Minus
Query: 4 ggaattcgtgattcctgaaacagtcattgtgacaagaaattccagtagcctaagatttaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 ggaattcgtgattcctgaaacagtcattgtgacaagaaattccagtagcctaagatttaa 973
Query: 64 ggagagggacatatcctaaagtcacatttaggaactcagatataattgagaaaacaaaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 ggagagggacatatcctaaagtcacatttaggaactcagatataattgagaaaacaaaaa 913
Query: 124 tgaaagatctaagatgtcaggggaatctggtgaccctccgcccccaccccccagctttct 183
||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
Sbjct: 912 tgaaagatctaagatgtcaggggaatctggtga-------ccccc-ccccccagctttat 861
Query: 184 gaacacaataggaaggagaaacacaccgtactgatttcacatccaaatatataaaatgta 243
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 860 gaacacaataggaaggagaa--acaccatactgatttcacatccaaatatataaaatgta 803
Query: 244 ttttgtagaatgcaaggtcttagcttgcagttacatggtttaatgcacattgattttcca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ttttgtagaatgcaaggtcttagcttgcagttacatggtttaatgcacattgattttcca 743
Query: 304 ccaactactctgggtagtatcttgcccatagcaagctctcaatatttttagcatgtaatc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ccaactactctgggtagtatcttgcccatagcaagctctcaatatttttagcatgtaatc 683
Query: 364 ttaaaattacaaataaaaaaaattctagaaaatgggaagttagcccaagaaagcttgctt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttaaaattacaaataaaaaaaattctagaaaatgggaagttagcccaagaaagcttgctt 623
Query: 424 gaagctttactatttatgacaaatattctggtttctgattagttgacatggattaaaatc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gaagctttactatttatgacaaatattctggtttctgattagttgacatggattaaaatc 563
Query: 484 cctctccttgtctgtttttaagtttttggtttataatgaaggctcctagtaaagaaaatc 543
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cccctccttgtctgtttttaagtttttggtttataatgaaggctcctagtaaagaaaatc 503
Query: 544 agtatgaaatgcagtgtttaaaatctctctaatgcattctataccaatgaaataatttaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agtatgaaatgcagtgtttaaaatctctctaatgcattctataccaatgaaataatttaa 443
Query: 604 ggcaaactggaaatgatttgggataaaataagtgaagaaatttttcacataaaaataatg 663
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 442 ggcaaactggaaatgatttgggataaaataagtgaagaaatttttcaaataaaaataatg 383
Query: 664 aatatatctctatctatct 682
|||||||||||||||||||
Sbjct: 382 aatatatctctatctatct 364
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1080
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1070
Effective search space: 720110
Effective search space used: 720110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no173_b08.g1 MSMg01no173_b08.g1 CHROMAT_FILE:
MSMg01no173_b08.g1 PHD_FILE: MSMg01no173_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:41 2005
(650 letters)
>mm_chr3_24824268_24825322
Length = 1055
Score = 1214 bits (628), Expect = 0.0
Identities = 646/654 (98%), Gaps = 5/654 (0%)
Strand = Plus / Plus
Query: 1 tcataaaataagtacaagctactcatggttttcacaaagaatgcatgtggacacatatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcataaaataagtacaagctactcatggttttcacaaagaatgcatgtggacacatatgc 260
Query: 61 acatacacacacacatacacacagacacatacacacagacatatacacacagagagagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatacacacacacatacacacagacacatacacacagacatatacacacagagagagca 320
Query: 121 gtatagaaaaatcaactgaagcctagaatttttaaattctagt--aaaaaaaatgagcat 178
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 321 gtatagaaaaatcaactgaagcctagattttttaaattctagtaaaaaaaaaatgagcat 380
Query: 179 ttgcgttaaaaattctatctt---aacgtatttcatgaccaaaataacagagagtattcc 235
|||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ttgcattaaaaattctatcttaagaacgtatttcatgaccaaaataatagagagtattcc 440
Query: 236 taccccatccttttactaataagttcggagtaaatttaggaaaaatagtattaaataaaa 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taccccatccttttactaataagttcggagtaaatttaggaaaaatagtattaaataaaa 500
Query: 296 agctcacaaacacccttcaaatccttgcatttcacacacaagctactttcattaggatgg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctcacaaacacccttcaaatccttgcatttcacacacaagctactttcattaggatgg 560
Query: 356 cagtacataaaatagggaatgtgctgggtgtatttttcagcagattagctgtcctaatta 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtacataaaatagggaatgtgctgggtgtatttttcagcagattagctgtcctaatta 620
Query: 416 cattttgctaggctaatgttaaaattagtttcaattccctaagtactcatcagttgatca 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattttgctaggctaatgttaaaattagtttcaattccctaagtactcatcagttgatca 680
Query: 476 cagagagagcaggcttgcaacttcctaggtactggaaagaaaccacctacaattaaagat 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagagagagcaggcttgcaacttcctaggtactggaaagaaaccacctacaattaaagat 740
Query: 536 gtagataatttaatctgtaataacagtgcatatagatagggtgaattaggtgctcatcaa 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtagataatttaatctgtaataacagtgcatatagatagggtgaattaggtgctcatcaa 800
Query: 596 ctcttaaactcccgtagattatctacagaaaaaaatcatataaaatatctaaga 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctcttaaactcccgtagattatctacagaaaaaaatcatataaaatatctaaga 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1055
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1045
Effective search space: 668800
Effective search space used: 668800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
