BAC Information

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BAC

Clone NameMSMg01-173H23
Chromosome3 (Build37)
Map Location 117,095,829 - 117,096,440
singlet/doubletsinglet
Overlap genenone
Upstream geneCdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e
Downstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173H23.T7 (MSMg01no173_h23.b1)MSMg01-173H23.TJ (MSMg01no173_h23.g1)
ACCAG369088AG369089
length707750
length of high quality
(start - end)
323 (46 - 368)611 (74 - 684)
definitionCHROMAT_FILE: MSMg01no173_h23.b1 PHD_FILE: MSMg01no173_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:11 2005CHROMAT_FILE: MSMg01no173_h23.g1 PHD_FILE: MSMg01no173_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCATTGCAGTTTTGACTATCAGAAGAGACCTAATAGCAATCCTAC
TATAAAAGAGCTTAATGTTAGGAATTCTTATAGGATCATCATAAAGATTT
AAGAAGTCATCTATTTGTCTATATAGTATTACTACAAGACAGCGTATTTT
CGTAAGTCTGCAGAGATCTTCTCAAAAGGCGGGTTAATACATAGTGATTG
TTATATATGTTTAATAATAACAGAAAAAGCATATTAATAGCAGGAATCTT
TCCTAAAATGATTTTCTCCTGTGCCTTGCCTACTGCAGTTCTGTTGTAGA
TGTTAATCTAAGGTGGTCATCTCACCACCCCCCGCCTGCTAGTTATTAGC
TTGTCCTGTGATGGCTCCTGACAGAAGGGAGACTCCAAAAGAAGTCATGT
TGAGAAAGACTGTGGTCCATAGCTGTTATTGTAAGACATTTGTATAATTA
CTCCAAGTTCTTAAGTTGTTATTGTGCTTAATTTATAAATTGATATTTTC
ATAATTGTGAATGTGTACGTGTAATATAGTATATCTAGGATTTGATGTTA
CCTAGAGTCTCAGGCATCTAGTTGCTCCTTACTGGATGCTTTCTCCCAAA
ATCATGCTGGAACTTCAATGTTTAGGCTTTGTTCAGTTTTCCCATCAGCC
CAAGTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACCCAGTTCCTTTTTTCATTCATTAA
GTCTCCAAGAGTTTAGCTATATGCCCGTTCTTCTATTAAATTCCTGAGTT
CTATCTACATTTTATACGTGCATATATGTAACCCATCACATATTTACTTG
TGATCTTTTGTTTGGTAATTGATTGATCTCCACTGAGTTTTGACAAAGCC
ATAGACTCCTATAACACAGAACACCTTGGTTGGAAGCCCAACTTTAAGTT
CAGTGTTCTATGGAAACAAACATGTAAAACTCTTCCCCAAGCCTTGGAGA
AGACATTATAGAGATGTCCTGTTGACGACTAAGCATGCAAAGGTTAGTTG
CCCTTGCTCAAGTAAATATCCCTGATCACAGTAGTTCTTCTGTGTGACCC
TAATTAACTATAATTAACCAGAAATAAATGACACAAAGAAACAAGGAGGA
TTTGGTAAGAATAAGGGGCTTGTTGGAAAGAAGAAAGGTATAAGAGAGAA
AATGGTGAAGCTACTCTTTTAAATTTAATTTTATTATTTTTACTTATTCA
TTTTTACATCCACCTCAATGTCCCTACCAGTCACAGCCTCCCACACTCCT
TCCCATCCATCCCTCTTCCCATTCTCCTCTAAGAGGGTGCCCTCTCAGTG
TCCCCCCAACTCTGGCACTTCAAGTCTCTGCGAGGCTAGACTGGGCAGCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_h23.g1 MSMg01no173_h23.g1 CHROMAT_FILE:
MSMg01no173_h23.g1 PHD_FILE: MSMg01no173_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:11 2005
         (611 letters)



>mm_chr3_117095728_117096738
          Length = 1011

 Score = 1067 bits (552), Expect = 0.0
 Identities = 597/612 (97%), Gaps = 1/612 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacccagttccttttttcattcattaagtctccaagagtttagctatatgcccgttcttc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||   |||||||
Sbjct: 713 cacccagttccttttttcattcattaagtctccaagagtttagctaaatggatgttcttc 654

                                                                       
Query: 61  tattaaattcctgagttctatctacattttatacgtgcatatatgtaacccatcacatat 120
           ||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 653 tatcaaattcctgagttctatctacattttatatgtgcatatatataacccatcacatat 594

                                                                       
Query: 121 ttacttgtgatcttttgtttggtaattgattgatctccactgagttttgacaaagccata 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 593 ttacttgtgatcttttgtttggtaattaattgatctccactgagttttgacaaagccata 534

                                                                       
Query: 181 gactcctataacacagaacaccttggttggaagcccaactttaagttcagtgttctatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gactcctataacacagaacaccttggttggaagcccaactttaagttcagtgttctatgg 474

                                                                       
Query: 241 aaacaaacatgtaaaactcttccccaagccttggagaagacattatagagatgtcctgtt 300
           ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 473 aaacaaacatggaaaactcttccccaagccttggagaagacattatagagatatcctgtt 414

                                                                       
Query: 301 gacgactaagcatgcaaaggttagttgcccttgctcaagtaaatatccctgatcacagta 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 413 gacgactaagcatgcaaaggttagttgcccttgctcaagtaaatatcccttatcacagta 354

                                                                       
Query: 361 gttcttctgtgtgaccctaattaactataattaaccagaaataaatgacacaaagaaaca 420
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 353 gttcttctgtgtgaccctaattaactatagttaaccagaaataaatgacacaaagaaaca 294

                                                                       
Query: 421 aggaggatttggtaagaataaggggcttgttggaaagaagaaaggtataagagagaaaat 480
           |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 293 aggaggatttgggaagaataaggggcttgttggaaagaagaaagggataagagagaaaat 234

                                                                       
Query: 481 ggtgaagctactcttttaaatttaattttattatttttacttattcatttttacatccac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ggtgaagctactcttttaaatttaattttattatttttacttattcatttttacatccac 174

                                                                       
Query: 541 ctcaatgtccctaccagtcacagcctcccacactcctt-cccatccatccctcttcccat 599
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 173 ctcaatgtccctaccagtcacagcctcccacactccttccccatccatccctcttcccat 114

                       
Query: 600 tctcctctaaga 611
           ||||||||||||
Sbjct: 113 tctcctctaaga 102


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)