BAC Information

Click to search

BAC

Clone NameMSMg01-173L09
Chromosome3 (Build37)
Map Location 37,020,434 - 37,020,667
singlet/doubletsinglet
Overlap geneIl2
Upstream geneD3Ertd254e, Gpr103, Anxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987
Downstream geneIl21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173L09.T7 (MSMg01no173_l09.b1)MSMg01-173L09.TJ (MSMg01no173_l09.g1)
ACCAG369236AG369237
length724722
length of high quality
(start - end)
316 (45 - 360)234 (123 - 356)
definitionCHROMAT_FILE: MSMg01no173_l09.b1 PHD_FILE: MSMg01no173_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:26 2005CHROMAT_FILE: MSMg01no173_l09.g1 PHD_FILE: MSMg01no173_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACCGTGTACCCGTGAGTGGCCAAGAAACACTTAAAGAAATGTT
CAACATCCTTAGTCATCAGGGACCCGCAAATCAAAAGAACTCTGAAATTC
TACCTTATGCCAGTCAGAATGGCTAAGATTGAAAACTCAGGTGATAGTAG
ATGCTGGGAAGGATGTGGAGAAAGAGGAACACTCCTCCTTTGCTGGCAGG
ATTGCAAATTGGTGCAAACATTCTGGAAATCAATCTGGCAGTTCCTCAGA
AAGTTGGAAATAATTGACCTGATTACCCAGCTATACCACTCCTGGGCATA
TACCCAAAAAATGTTCTTTCATCCCACCCCCACAGGTGCTCCTCTAAATT
CATAGCAGCCTTATTTGTAATAGCCAGAAGCTAGAAACAACCCAGATGTC
CCTCAATCAAAGAACAGATACAAAAAATGTGGTTCATTTACACAATGGAA
TATTATTCAGCTATTAAAAGTGAGGAAATCATGAATTTTGCAGGCAAATG
GATGGAACTAGACAATATCATCCTGAGTGAGATAACCCAGACCCAAAAGA
CATGCATGGTATGTACTCACTGATAACTGGATATTAGCCCAAAAGTTCAG
AATACTTAGCATATTACCCACAGACCTTAAAGAAGTTCTGTAAGAAGGAA
GGCCCAAGTGAGGATGCTTCATTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTTGCTTGACCACTTTTTCTCTGGT
AAGTGTACACAGTTATGCACCAATTTAGGCTTCAGGAATGGAGAAATGAT
ACTTGTTATATGTTCTTTGCTAAATCTTAAGAGTCTATTATTCAATTCTT
TCCCCCCCAAGTCAGAATGGGAACAACCCAGAGTAGGTTAGGACAAGCAT
CTATTGGGGGAAATTTGGAGAATTTTGTTATAGATATACCTACCCTGATA
CCAGTGTAGATGAATCACAAAGTTTGTACATGTATAAATATTATAAATTT
GTTCTGTTTTTTAGCTCCCCCGACGCTAACCCTCTTTGCTAAAGGAGATA
TTTTAATTCTGTTTTTAGGTGACAAGCTGAGAAGGAAATATTTTGACAAA
TTTATGGGATGGCTTTTCCAAATCTGACTAATTCCTTGTAAGTCAAATGA
GGCAGATTATTCCTTTTAAATAAATACTCCTTTTCAAATAAGCTGCTGTG
GTCTTATATACCCTCTTTACATAGCTACTTCAATATTCTAATGTCTTGAA
TTTTTCATTTTTAAAAATATGTGGCCCTTGAAACATTTTTCTAGCTCTCA
TGTAGCTCTAAAGTTTGTATCACTCATTAGGGGTGAACTTTCTGATGTTG
GCCATAGACTTTATAGCATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_l09.g1 MSMg01no173_l09.g1 CHROMAT_FILE:
MSMg01no173_l09.g1 PHD_FILE: MSMg01no173_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:26 2005
         (234 letters)



>mm_chr3_37020234_37020867
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttaggcttcaggaatggagaaatgatacttgttatatgttctttgctaaatcttaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttaggcttcaggaatggagaaatgatacttgttatatgttctttgctaaatcttaaga 260

                                                                       
Query: 61  gtctattattcaattctttcccccccaagtcagaatgggaacaacccagagtaggttagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctattattcaattctttcccccccaagtcagaatgggaacaacccagagtaggttagg 320

                                                                       
Query: 121 acaagcatctattgggggaaatttggagaattttgttatagatatacctaccctgatacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaagcatctattgggggaaatttggagaattttgttatagatatacctaccctgatacc 380

                                                                 
Query: 181 agtgtagatgaatcacaaagtttgtacatgtataaatattataaatttgttctg 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgtagatgaatcacaaagtttgtacatgtataaatattataaatttgttctg 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)