BAC Information

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BAC

Clone NameMSMg01-173L23
Chromosome3 (Build37)
Map Location 16,763,991 - 16,764,307
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC622425, LOC664795, LOC381484, Ythdf3, LOC100040034
Downstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173L23.T7 (MSMg01no173_l23.b1)MSMg01-173L23.TJ (MSMg01no173_l23.g1)
ACCAG369262AG369263
length710747
length of high quality
(start - end)
325 (46 - 370)294 (77 - 370)
definitionCHROMAT_FILE: MSMg01no173_l23.b1 PHD_FILE: MSMg01no173_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:29 2005CHROMAT_FILE: MSMg01no173_l23.g1 PHD_FILE: MSMg01no173_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTACTTTATTATTTTCTGCATTCTTGTGACTTATAAATTACATC
CTTAATCCCCTATAAATAGAAGTTTTTCAGATGAGGGTTGAGAGATGTAC
AGATTAATGGGAATAATAACAACTCTTTAATTCTATGTCAACTTAAGAGC
ATAATAGTGGTTGAGTTCTGCAATAAGGCCTCTGCATTATGTACCTAGTC
AGTAATAGTGTCAGGTATCTTGTGGAAGAGGATTTGGATTCAATCAGAAA
GTGGCTAATTATTCCATGATGCCTTTGGTACTATTGCTCCAGTGAGCATG
TCTTGTCTGGTCTTTTTTTGTCCACCGCCCCCCATGATTGACGTGTACAT
TTCTGCTCCAGTCATTTATGTAACACTTTCCAGCATTATGAAAGCTAGCT
GCTATGGATGAATTTTCCAGGTCTGTTTGACATGTTCTAGGACTCAAGTA
TGTGGTGTCATCAGACAGAAATAGCATTTGTCAAGTTCTCTAATCAAGAA
CAATAGCAATAGACTATAATATTTGGGAGTCTGTGAGAGCTCACTAGCTA
ACAACTCCACAAGACAGATCATATTCCTGCCACTGGGGTTTTTGCTAGTT
AGCCTCTTGTATCTATTAGGGATATCGGTGCCCTGTTCCATCTTAACCCT
CTAAATATTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACCCTAAGTTTGACTATTTCCCA
CCATCAACTCCTCTTGGGTGTTTTTGCCTCTTTTTCTTATGTAGCTTTCA
GGTGTGCTGTTAATCTGCTAGTGTATGTGCTCTCTCCAGTTTCTTTTGGG
AGGCACTCAGAGCTATGAGTTTTCCTCTTAGCACTGTTTTCTTTGTGTCC
CATAAGTTTTGGTGTGATGTGTCTTCATTTTCATTAAAATTTAAAACTTC
TTTTATTTCTCTCTTCACATCTACCTTTACCAAGTTATTACTGAGTAGAG
TGTTGCTCAGCTTCCATGTGTATGTGGCCTTCCTGTTGTTTTTGTGGTTA
TTGAAGAACATATTTAGTCCATGGTGATCTGATAACATGCATGGGCTTAT
GTCAATCTTCTTGTATCTGTTGAGGTCTGGTTTGTGACTGATTATATGGT
CTATTTTGGAGACGGGAACATGAGGTCCTGAGAAGAAAGTATATTCTTTT
CATTTAGGATGAAATGTTCTATAGATATCTGTTAAATTATTCTGGTCCAT
AGCTCCTGTTAGTCTCATTGTATTTTGGTTTATGTTGCGCTTCCATGATC
TTTTCATTGCTGAAAGTGCCTTGATGTACCCCCCTTCTATATTTTATAAT
TTTTATGACCATTATTATATATCAATATTCTCACTTCTTACATCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_l23.b1 MSMg01no173_l23.b1 CHROMAT_FILE:
MSMg01no173_l23.b1 PHD_FILE: MSMg01no173_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:29 2005
         (325 letters)



>mm_chr3_16763900_16764624
          Length = 725

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtactttattattttctgcattcttgtgacttataaattacatccttaatcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 408 ggaattctgtactttattattttctgcattcttgtgacttataaattacattcttaatcc 349

                                                                       
Query: 64  cctataaatagaagtttttcagatgagggttgagagatgtacagattaatgggaataata 123
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tctataaatagaagtttttcagatgagggttgagagatgtacagattaatgggaataata 289

                                                                       
Query: 124 acaactctttaattctatgtcaacttaagagcataatagtggttgagttctgcaataagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 acaactctttaattctatgtcaacttaagagcataatagtggttgagttctgcaataagg 229

                                                                       
Query: 184 cctctgcattatgtacctagtcagtaatagtgtcaggtatcttgtggaagaggatttgga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 cctctgcattatgtacctagtcagtaatagtgtcaggtatcttgtggaagaggatttgga 169

                                                                       
Query: 244 ttcaatcagaaagtggctaattattccatgatgcctttggtactattgctccagtgagca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ttcaatcagaaagtggctaattattccatgatgcctttggtactattgctccagtgagca 109

                            
Query: 304 tgtcttgtctggtcttt 320
           |||||||||||||||||
Sbjct: 108 tgtcttgtctggtcttt 92


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)