TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCAAAAATTCTGAAAGTGTATTGAAAGAACAGGAAGTTTCCTAA
TAGCTCACACTGCCTCCACAATGTCTTCCCCCCACCACTGGAGAAAATGT
ATTCCCTCCAAAGAGGAAATTTGCTTGTCATGAGTCTATGTTATCACACA
CCCTTTGCCAAGCCTGAGCCTTCATATATAGTTTGAAGAATGTGAAATTT
TAAAAGCTGCATTACATTCCTTGACCTCAGCACAAGATTTAATACAAAGC
TAAAGTCACTCTTTAGCATACGCTAAATACTTTCAAGGTTCTTCATGATT
TAACGAGTTTTATGATTTCTCTTGATTCAAGATTCAGTGACAATATTGTT
TATGAATAATAAATTGCTATAATCAGGCCCTGAGGTTCGCTGATTGCTAC
ACTAGTGGGTGGATTCTCTGCCTAGCCCCCACAGCTTGACTGAACATGTT
GACTTTCCTCAACTCTTACCTGGACACTCTGGGGAAGAACCCACTTCTGG
GTCTGGCCAAGGTGACAGTAAAATCCCATCTTAGGCTGATTGTGAGGCTG
AGATCCTGGCTTTGCTCTTTTAGAGGACACCCTTGAACCCATGGACTGCT
CCATGCATATTCAGGGCCAAGAATTGAATGACGATCCTTTCCCTGTGTGT
ATGCTTCTTCAGGTGGAGAAAATATC

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAGTGCGGAAAGAGAAGAAGAGGAA
AGGGGAAGTGGTTTTATAACTGAGCACTTTTCAGAATAGTATCACTAGAA
ATAACATTTACCAATTTTGGAGCAACGTTTGTTGTGATGTTTTTGGTTTT
TTTTGGGGGGGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCNNNNNNTTTTTTTTTTTNCTTTTTTTTTCTNNTTCTTNTTT
NNTTNTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCNNNNNNNNNNNNN
NNNNNNNNNNNTNNNNNNNCCCCCCCCTCTATAAAAAAAAAAATAATTCT
TGGGGGGGGGGGCGCTCCCACCCCCCTTCCTCTTCTCTTCCTCCCCTCCT
TCTACTTCTCCTTCTCCTTCCTTCCTTTCCCCTCCTGTCGGTCTATTCTT
TCCCATTCCCTCCACCTCACTTCCCCTTTCCCCTCCCCGCTTGCCCCCTA
TCCATTCCCCTCACCTCCACATTTCTCCTCCTTTTTGCCTTTTCTCGCCC
TTTTCTCCCACATCTCCTGTTCCCTCTACCCTTTGTAATCACTTATCTTC
CCCGTTTCTCGACCTTTCACCGGGCCCCCATCCGCGCTTTCCCTTGTTGC
GCCTTTCTCCCTCCTCTACCGATATCACCCTCCGCGTCACACCCACTATA
TCTCTCGCCCCTCCTTATTTAC

Query= MSMg01no174_p14.b1 MSMg01no174_p14.b1 CHROMAT_FILE:
MSMg01no174_p14.b1 PHD_FILE: MSMg01no174_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:57 2005
         (677 letters)



>mm_chr3_11000676_11001752
          Length = 1077

 Score = 1137 bits (588), Expect = 0.0
 Identities = 606/612 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttcaaaaattctgaaagtgtattgaaagaacaggaagtttcctaatagctcac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gaattctttcaaaaattctgaaagtgtattgaaagaacaggaagtttcctaatagctcac 553

                                                                       
Query: 65  actgcctccacaatgtcttccccccaccactggagaaaatgtattccctccaaagaggaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 actgcctccacaatgtcttccccccaccactggagaaaatgtattccctccaaagaggaa 493

                                                                       
Query: 125 atttgcttgtcatgagtctatgttatcacacaccctttgccaagcctgagccttcatata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atttgcttgtcatgagtctatgttatcacacaccctttgccaagcctgagccttcatata 433

                                                                       
Query: 185 tagtttgaagaatgtgaaattttaaaagctgcattacattccttgacctcagcacaagat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tagtttgaagaatgtgaaattttaaaagctgcattacattccttgacctcagcacaagat 373

                                                                       
Query: 245 ttaatacaaagctaaagtcactctttagcatacgctaaatactttcaaggttcttcatga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttaatacaaagctaaagtcactctttagcatacgctaaatactttcaaggttcttcatga 313

                                                                       
Query: 305 tttaacgagttttatgatttctcttgattcaagattcagtgacaatattgtttatgaata 364
           |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 312 tttaacgacttttatgatttctcttgattcaagattcagtgacaatactgtttatgaata 253

                                                                       
Query: 365 ataaattgctataatcaggccctgaggttcgctgattgctacactagtgggtggattctc 424
           |||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 252 ataaattgctataagcaggccctgaggtttactgattgctacactagtgggtggattctc 193

                                                                       
Query: 425 tgcctagcccccacagcttgactgaacatgttgactttcctcaactcttacctggacact 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tgcctagcccccacagcttgactgaacatgttgactttcctcaactcttacctggacact 133

                                                                       
Query: 485 ctggggaagaacccacttctgggtctggccaaggtgacagtaaaatcccatcttaggctg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ctggggaagaacccacttctgggtctggccaaggtgacagtaaaatcccatcttaggctg 73

                                                                       
Query: 545 attgtgaggctgagatcctggctttgctcttttagaggacacccttgaacccatggactg 604
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 72  attgtgaggctgagatcctggctttgctcttttagagggcacccttgaacccatggactg 13

                       
Query: 605 ctccatgcatat 616
           ||||||||||||
Sbjct: 12  ctccatgcatat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)