BAC Information

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BAC

Clone NameMSMg01-175C24
Chromosome3 (Build37)
Map Location 59,166,854 - 59,167,191
singlet/doubletsinglet
Overlap genenone
Upstream geneTsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751
Downstream geneEG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175C24.T7 (MSMg01no175_c24.b1)MSMg01-175C24.TJ (MSMg01no175_c24.g1)
ACCAG370253AG370254
length720721
length of high quality
(start - end)
672 (49 - 720)338 (384 - 721)
definitionCHROMAT_FILE: MSMg01no175_c24.b1 PHD_FILE: MSMg01no175_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:13 2005CHROMAT_FILE: MSMg01no175_c24.g1 PHD_FILE: MSMg01no175_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTAAACCTGAATAACAGCTTCAGTGCAGTAGCTGGATATAAA
ATTAACTCAAGCAAGTCAATGCCCTTCCTCTACACAAAGAATAAACAGGC
TGAGAAAGAAATTAGGGAAACAACACCCTTAACAATAGTCACAAGTACTA
TAAAATACCTTGGTGTGACTCTAACAAAGGAAGTGAAACATCTGTATGAT
AAGAACTTCAAGTCTCTGAAGAAAGAAATCAAAGAAGATCTCAGAAGATT
GAAAGATCTCCCATGCTCATGGATTGGCTGAATCAATATAGTAAAAATGG
CTATCATGCAAAAAGCAATCTACAGATTCCATGCAATCCCCATCAAAATT
CCAACTCAATTCTTCAACGAATTACAAAGGGCAATTTGCAAATTCATCTG
GAATAACAAAAAACCTAGGAGAGCAAAAACTCCTCTCAATAATAAAAGAA
TCTCTGGTGGAATCTCAATGCCTTACCTAAAACTGTACTGCAGAGCAATT
GTGATTAATACTGCATGGTATTGATATGGCTACACATAAGTAGACCAATG
GAATAGAATTGAAGACCCAGAAGTGAACCCACACACCTATGGTCACTTGA
TCTTTGACAAGGGAGCTAAAACCATCTAGTGGAAAAAAGACAGCATTTTC
AAGAAATGTTGCTGGCACAA
TTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAAGCTGCTATTTATGATTG
ATATCTAACTGGTATTTCTATTTGCCCAGTGATCTTCCGTCCATTGCCAT
AGAGATGGGATGCTGTTTCTGGATTCTCTTGCATGCTGACAGATGTTCTA
TGCCTGCCTTTTTCACCCAAGTAGTTTTGCTCATGCAGGAATTTCAAGTG
ATCCATCTGATTCAACAATGAAGCTTTTGGGGACTGAAACTTTATTTTAA
AATGTATCTGAACAAGGAAAACCAAAAAGTAAGACACTGACTGTATAGGC
AAAGAAGTCTCTATTTTTTAAATGCCCACTGACTTTACTGACATATTTTA
TAAAACGGTGAATATATTCACACCTCATAATTTTTAGGTGAGACCCTTAG
CATCCTTGGATTTGAGTTAGAGCAAAGTTGATTTTGTTTTCACTTTGCAC
GAAAGAAATTGATAATGTAAATAAAATGTGGTAGGAGAATTAGACTATGA
TTTTGGAAATGAATTGAATATAGTATAAATAGTATCAATTACTCATCCAT
TTATTTGTCTGTTGAAACAGATAAAACTATTTATAAATAGAGCCATGATG
GTTGAGATTGTGTTTCTAGAAATAAAGCTAGCTATATTAAAATAAAAAAA
AAATCCTGATTCCTAGTTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_c24.g1 MSMg01no175_c24.g1 CHROMAT_FILE:
MSMg01no175_c24.g1 PHD_FILE: MSMg01no175_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:13 2005
         (338 letters)



>mm_chr3_59166654_59167391
          Length = 738

 Score =  638 bits (330), Expect = 0.0
 Identities = 336/338 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttactgacatattttataaaacggtgaatatattcacacctcataatttttaggtgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttactgacatattttataaaacggtgaatatattcacacctcataatttttaggtgaga 260

                                                                       
Query: 61  cccttagcatccttggatttgagttagagcaaagttgattttgttttcactttgcacgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccttagcatccttggatttgagttagagcaaagttgattttgttttcactttgcacgaa 320

                                                                       
Query: 121 agaaattgataatgtaaataaaatgtggtaggagaattagactatgattttggaaatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaattgataatgtaaataaaatgtggtaggagaattagactatgattttggaaatgaa 380

                                                                       
Query: 181 ttgaatatagtataaatagtatcaattactcatccatttatttgtctgttgaaacagata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgaatatagtataaatagtatcaattactcatccatttatttgtctgttgaaacagata 440

                                                                       
Query: 241 aaactatttataaatagagccatgatggttgagattgtgtttctagaaataaagctagct 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caactatttataaatagagccatgatggttgagattgtgtttctagaaataaagctagct 500

                                                 
Query: 301 atattaaaataaaaaaaaaatcctgattcctagttaac 338
           ||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 atattaaaataaaaaaataatcctgattcctagttaac 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)