Query= MSMg01no175_i15.b1 MSMg01no175_i15.b1 CHROMAT_FILE:
MSMg01no175_i15.b1 PHD_FILE: MSMg01no175_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:38 2005
(313 letters)
>mm_chr3_86653950_86654662
Length = 713
Score = 543 bits (281), Expect = e-159
Identities = 305/319 (95%), Gaps = 10/319 (3%)
Strand = Plus / Plus
Query: 5 gaattctgcatgctgggaaacactgatgaattgtgtgcatgcagaatttcttatcttttt 64
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaattctgcatgctgggaaacaccgatgaattgtgtgcatgcagaatttcttatcttttt 254
Query: 65 cttgcatccagagacatgatattctttcaaagaaacatctactt----------tttttt 114
|||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 255 cttgcatccagagacatgatattctttcaaagaaacatctacttattttttttttttttt 314
Query: 115 tttttttgcaagtctccagggttgtcaattaaactggtactgggaccagaaagtaaggga 174
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tttttttgcaagtctccagggctgtcaattaaactggtactgggaccagaaagtaaggga 374
Query: 175 agttgtctgcaagcatttatcatcaagttatatgccttgcggaggagccagctgtcttaa 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agttgtctgcaagcatttatcatcaagttatatgccttgcggaggagccagctgtcttaa 434
Query: 235 ataaccatctcctccctggggccacaagtctgggcaagaatgctgctcatgtcagaaact 294
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 435 ataaccatcccctccctggggccacaagtctgggcaagaattctgctcatgtcagaaact 494
Query: 295 catgtcataagattagatt 313
|||||||||||||||||||
Sbjct: 495 catgtcataagattagatt 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no175_i15.g1 MSMg01no175_i15.g1 CHROMAT_FILE:
MSMg01no175_i15.g1 PHD_FILE: MSMg01no175_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:38 2005
(457 letters)
>mm_chr3_86764330_86765184
Length = 855
Score = 849 bits (439), Expect = 0.0
Identities = 452/457 (98%), Gaps = 2/457 (0%)
Strand = Plus / Minus
Query: 1 caaacgtcacacacttgcaaaaactatctagagctggcgaaaccacgcccctgttagagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 caaacgtcacacacttgcaaaaactatctagagctggcgaaaccacgcccctgttagagc 774
Query: 61 gtgaagcaaaccacaggcggttgccgtgaagcagccctatagctcacacctgggatgaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 gtgaagcaaaccacaggcggttgccgtgaagcagccctatagctcacacctgggatgaaa 714
Query: 121 acgaaacacactctcataatagtcctgtgcttttaaagaaaccaaaattcccactacata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 acgaaacacactctcataatagtcctgtgcttttaaagaaaccaaaattcccactacata 654
Query: 181 aacctatgcgtgttagcgtgtctgggtaggctttgagtagtcccaaaataggcataagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aacctatgcgtgttagcgtgtctgggtaggctttgagtagtcccaaaataggcataagga 594
Query: 241 agcaaacacaagtgaaaaaaaaaatggttttcaaaatgttctcagggatccaagataaga 300
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 agcaaacacaagtg--aaaaaaaatggttttcaaaatgttctcagggatccaagataaga 536
Query: 301 taggaattcatgttaaatggccttctagatgcttcatggccctcaccaacactaggtcac 360
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 535 taggaattcatgttaaatggccttctagatgcttcatgggtctcaccaacactaggtcac 476
Query: 361 gtgacagcccgatttcgggcagagctgtgctgggaatgttcttatatttcttttccaagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gtgacagcccgatttcgggcagagctgtgctgggaatgttcttatatttcttttccaagc 416
Query: 421 actgtctagcagtaagaattagaagcatcttgcttag 457
||||||||||||||||||||||||||| |||||||||
Sbjct: 415 actgtctagcagtaagaattagaagcagcttgcttag 379
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 855
Length adjustment: 10
Effective length of query: 447
Effective length of database: 845
Effective search space: 377715
Effective search space used: 377715
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
