BAC Information

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BAC

Clone NameMSMg01-176O21
Chromosome3 (Build37)
Map Location 106,289,829 - 106,290,499
singlet/doubletsinglet
Overlap geneDennd2d
Upstream geneKcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik
Downstream geneCept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176O21.T7 (MSMg01no176_o21.b1)MSMg01-176O21.TJ (MSMg01no176_o21.g1)
ACCAG371480AG371481
length1,1561,124
length of high quality
(start - end)
672 (136 - 807)684 (127 - 810)
definitionCHROMAT_FILE: MSMg01no176_o21.b1 PHD_FILE: MSMg01no176_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:18 2005CHROMAT_FILE: MSMg01no176_o21.g1 PHD_FILE: MSMg01no176_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGACTCTTGNNNAAAACAGTGCGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTATCCTGAGGATTTCCATAAAAGACCCCGAAGATTAG
AAAGGNCAGNTGGANCAACCCTTTGAGAGGGCGGNATCAGAGAGAAACCA
CATCATAGAAAAGAAGCAACCCTTCCAGTTGCTAAACCTTCTAACAAGAG
AGGCTGGTAAGAAGGGGACATTACGCCTCACCCAGTGCATGATCAGGCAA
GAAGAGATCTAATACTTTGGGAGTCTGATCTTAGGCTGTGCTTGAGTCTG
GGGCCTGCTTGATTCTCTACCACACAACCAGGAAGGCCATCCCTTCTTAG
TAGTTCCAGCAGAAGCTGAGTTTTCTTGTAGGAAAAGGTGACTGAGGTGG
AATTTGGAAGAATTGAAGGTTTCCCACAGGGGCAAGAGCATTGTTTCCCT
GCTCCAGAGGTTCAGTCAGTCCTTCACAAAGCAGTCAGACCTAGATTCTC
TGGGTGATTACAGAAAACTAGGGCTGGGCTACAAAGGAAACTAGAGCAGT
GAGCTCAGGGCTAGAGCCCAGCCAGCGTGGTAAGACATAGAACTCCTCTA
TTACCTTTTAAACACACCTTCGTCCTCCCACCTCCATCCTCAGGCCCCAC
TTCTCCCTCCATCCTTACCTTGGGAAACTGGTACGTGATCGTGGGCTCAT
AGTCATCCCCTAAACGCTTTTTCTTTAAAGAAACAACAAGACGGTATTCA
AAGAAGTGCTGGCCTCCAGCAAAGCTAGATGGAGAATGCTCCTGGATCCT
TTCTGGTTCTGTGACCGCTTCCCCAGGATTGTTCTGGGATTGTCCTAAAA
TGGAGATGCAAGGGTCTCTTGAGTATTCTTTCCACTCCTCCATTCTGTAG
TGCGAGCGAGAACCTGGGCAACACCATGCCTCAAGGCTACCAGGCCCAAC
CCTGACCAGGCACCACCCAGGCAGGATCAAAGCAAAGGGGGGAATTTTCC
ATACCTGCCCTGGGGAACTTGAAACTGGGGGAGCGACCCCGGGAAGAAAA
AGATAACCCGTGAGTTAAAACCCGAGGAACCCCTTTCCCTGCTGGAAAAA
GTTCTCTGGAAGACCCTGAAGCCCCGGAACCTGGATAATATCCGGCCCGG
AAGGCC
NCGAATCCATTNNTAAACAGGTGAGGCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTAAAAGGGAGGAATACTGA
ATGGNAGAGAAGCACCTGACCCCTTGTTCAACATCCTTAATCATCAGGAA
AATGCAAATCAAAACAACCCTGATTCCACCTCACACCAGTCAGAACGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGAAGAAAG
AGGAACACTCCTCCATTGTTGGTTGGATTGCAAGCTTGTACAACCACTCT
GGAAATCAGTCTGGCAAGTCGTCAGAAAATTGGACATAGTACTAATGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCGG
TAAGTAGGACACTTGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCACAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTCATGAAATTCCTAGGCAAATGGATGGACCTGGATGGCATCATCC
TGAGTGAGGTAACACAATCACAAAGGAACTCACACAATATGTACTCACTG
ATAAGTGGATATTAGCCCAAAACTTAGGATACCCAAGATATAAGATACAA
TTTGCTAAACGCATGAAATTCAAGAAGAATGAAGACCAAAGTGTGGACAC
TGTGCCCCTTCTTAGAATTGGGAACAAAACACACATGGAAGGAGTTACAG
AGACAAAGTTAGGAGCTGTGATGAAAGGATGGACCATCTAGAGACTGCCA
TATCTAGGGATCCACCCCATAATCAGCTTCCTAAAGCTGACACCATTGCA
TACAGTAACAAGATTTTGCTTGAAGGGACCCCAAATATAGCTCGTCTCTT
GGGGAGACAAAGCCCAGGGCCCTATCTAAAAATAAAAGGGGGAGGGTTCC
CCATCCACCTTAGGGGATGGAATCACAGGGGGCTCCCCCATTGAAGAAAT
TTGGTGGAAAAAATACCCCTCGGGGTTTCTAGGGGGGTTTTTACATCCTC
CCTATGTTGTGGAAAAACACCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_o21.b1 MSMg01no176_o21.b1 CHROMAT_FILE:
MSMg01no176_o21.b1 PHD_FILE: MSMg01no176_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:18 2005
         (672 letters)



>mm_chr3_106289629_106290700
          Length = 1072

 Score = 1236 bits (639), Expect = 0.0
 Identities = 663/671 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcagagagaaaccacatcatagaaaagaagcaacccttccagttgctaaaccttctaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 atcagagagaaaccacatcatagaaaagaagcaacccttccagttgctaaaccttctaac 812

                                                                       
Query: 61  aagagaggctggtaagaaggggacattacgcctcacccagtgcatgatcaggcaagaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 aagagaggctggtaagaaggggacattacgcctcacccagtgcatgatcaggcaagaaga 752

                                                                       
Query: 121 gatctaatactttgggagtctgatcttaggctgtgcttgagtctggggcctgcttgattc 180
           |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 751 gatctaatactttgggagactgatcttaggctgtgcttgagtcgggggcctgcttgattc 692

                                                                       
Query: 181 tctaccacacaaccaggaaggccatcccttcttagtagttccagcagaagctgagttttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tctaccacacaaccaggaaggccatcccttcttagtagttccagcagaagctgagttttc 632

                                                                       
Query: 241 ttgtaggaaaaggtgactgaggtggaatttggaagaattgaaggtttcccacaggggcaa 300
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 631 ctgtaggaaaaggtgactgaggtggaatttggaagaactgaaggtttcccacaggggcaa 572

                                                                       
Query: 301 gagcattgtttccctgctccagaggttcagtcagtccttcacaaagcagtcagacctaga 360
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 571 gagcattgtttccctgctccagagtttcagtcagtccttcacaaagcagtcagacctaga 512

                                                                       
Query: 361 ttctctgggtgattacagaaaactagggctgggctacaaaggaaactagagcagtgagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ttctctgggtgattacagaaaactagggctgggctacaaaggaaactagagcagtgagct 452

                                                                       
Query: 421 cagggctagagcccagccagcgtggtaagacatagaactcctctattaccttttaaacac 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cagggctagagcccaggcagcgtggtaagacatagaactcctctattaccttttaaacac 392

                                                                       
Query: 481 accttcgtcctcccacctccatcctcaggccccacttctccctccatccttaccttggga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 accttcgtcctcccacctccatcctcaggccccacttctccctccatccttaccttggga 332

                                                                       
Query: 541 aactggtacgtgatcgtgggctcatagtcatcccctaaacgctttttctttaaagaaaca 600
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aactggtaagtgatcgtgggctcatagtcatcccctaaacgctttttctttaaagaaaca 272

                                                                       
Query: 601 acaagacggtattcaaagaagtgctggcctccagcaaagctagatggagaatgctcctgg 660
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 acaagaaggtattcaaagaagtgctggcctccagcaaagctagatggagaatgctcctgg 212

                      
Query: 661 atcctttctgg 671
           |||||||||||
Sbjct: 211 atcctttctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)