Query= MSMg01no177_a16.b1 MSMg01no177_a16.b1 CHROMAT_FILE:
MSMg01no177_a16.b1 PHD_FILE: MSMg01no177_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:31 2005
(599 letters)
>mm_chr3_17546651_17547649
Length = 999
Score = 955 bits (494), Expect = 0.0
Identities = 510/520 (98%), Gaps = 8/520 (1%)
Strand = Plus / Minus
Query: 88 gacttctataaacatgtcatcactaatacacatgaacatatacacagagaaacatggacg 147
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 gacttctataaacatgtcatcactaatacacatgaacatatacacagagaaacatggaca 940
Query: 148 aaacatgagaaatgatatctgagctagtcttctggctttaacctacacacgtgtatgcgt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 aaacatgagaaatgatatctgagctagtcttctggctttaacctacacacgtgtatgcgt 880
Query: 208 actccacaaacctgcatttgcaaacatgtta--------acacacacacacacacacaca 259
||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 879 actccacaaacctgcatttgcaaacatgttaacacacacacacacacacacacacacaca 820
Query: 260 cacacacacacacacaaacattccagaacatgtagcaaagagaaaatacatttaataaat 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 cacacacacacacacaaacattccagaacatgtagcaaagagaaaatacatttaataaat 760
Query: 320 aaaatgttcatgataaataataatcatttactatagaaagtacagaatactgagtatgat 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 aaaatgttcatgataaataataatcatttactatagaaagtacagaatactgagtatgat 700
Query: 380 tattgagttgttaatgacaggagtgtgcacaaaggttagagaaacacaggggcatgaatt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tattgagttgttaatgacaggagtgtgcacaaaggttagagaaacacaggggcatgaatt 640
Query: 440 gttagaagagcttgtattgcgttaaggattttggacttatcctgacatcaaaagaatcag 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gttagaagagcttgtattgcgttaaggattttggacttatcctgacatcaaaagaatcag 580
Query: 500 aaatcattaaagaatgctgctgtgaaaacaatatttttaactttttcttaatggtattat 559
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aaatcattaaagagtgctgctgtgaaaacaatatttttaactttttcttaatggtattat 520
Query: 560 cttgacagtggaatggaatattattatagtgagatgatta 599
||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cttgacagtggaatggaatattattatagtgagatgatta 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no177_a16.g1 MSMg01no177_a16.g1 CHROMAT_FILE:
MSMg01no177_a16.g1 PHD_FILE: MSMg01no177_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:31 2005
(625 letters)
>mm_chr3_17456817_17457842
Length = 1026
Score = 1187 bits (614), Expect = 0.0
Identities = 623/626 (99%), Gaps = 1/626 (0%)
Strand = Plus / Plus
Query: 1 tctcttcaacaatgacttccaagccaggtctttcccaacctttaaactatctcctgtcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcttcaacaatgacttccaagccaggtctttcccaacctttaaactatctcctgtcat 260
Query: 61 ctgctcatcatgattaatacctgaacaggaagtactctacaattctcatcctagaaacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgctcatcatgattaatacctgaacaggaagtactctacaattctcatcctagaaacaa 320
Query: 121 agaaaatagtaagctggatcaagctaaatagaaaacattcagggttatcaatttctgtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaaatagtaagctggatcaagctaaatagaaaacattcagggttatcaatttctgtga 380
Query: 181 ttgtctactattctctgctagcaactgttattcaaggacttcgctaaaagatgcttccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtctactattctctgctagcaactgttattcaaggacttcgctaaaagatgcttccag 440
Query: 241 gttcaaaagtcaaatatagggagtgattgttgagacaaatataggaactttatttcacgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttcaaaagtcaaatatagggagtgattgttgagacaaatataggaactttatttcacgc 500
Query: 301 agcttagcatcctgagcagcttttagtaacctcacataattaaccttacttctctctctt 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 agcttagcatcctgagcagcttttagtaaactcacataattaaccttacttctctctctt 560
Query: 361 attcaacattcactctttctccc-aatgcttctctgagtcagcaaaagtatttgctggac 419
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 attcaacattcactctttctccccaatgcttctctgagtcagcaaaagtatttgctggac 620
Query: 420 ccaagtccagctactagctgcacaacaagaaaactacctggaaagacaaggtactaaaac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaagtccagctactagctgcacaacaagaaaactacctggaaagacaaggtactaaaac 680
Query: 480 aaggaagaaaactttattagaaaatatgacttaacagaaaactggaggtctcttgtccaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaggaagaaaactttattagaaaatatgacttaacagaaaactggaggtctcttgtccaa 740
Query: 540 tattaagctatctggaagatgacttatgggctttctgtagaaggggatggtggacgtccc 599
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tattaagctatctggaagctgacttatgggctttctgtagaaggggatggtggacgtccc 800
Query: 600 agaattggagggtacttggagaagct 625
||||||||||||||||||||||||||
Sbjct: 801 agaattggagggtacttggagaagct 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1026
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1016
Effective search space: 624840
Effective search space used: 624840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
