Query= MSMg01no177_i06.b1 MSMg01no177_i06.b1 CHROMAT_FILE:
MSMg01no177_i06.b1 PHD_FILE: MSMg01no177_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:06 2005
(591 letters)
>mm_chr3_18330562_18331552
Length = 991
Score = 820 bits (424), Expect = 0.0
Identities = 454/464 (97%), Gaps = 1/464 (0%)
Strand = Plus / Minus
Query: 5 gaattctagaaag-accaatccccaagttttaaataattttatactgttacaattgtttt 63
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gaattctagaaagaaataatccccaagttttaaataattttatactgttacaattgtttt 541
Query: 64 gttttgctttactaaatttttattgtattagtacttttattatcagaggtctgcatgtat 123
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gtttttctttactaaatttttattgtattagtacttttattatcagaggtctgcatgtat 481
Query: 124 agggaaaaactatagcatatatactagaactgtctgatctttcatggtctgtggtagggt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agggaaaaactatagcatatatactagaactgtctgatctttcatggtctgtggtagggt 421
Query: 184 ctctgaaggtacgtctatttccattgccatgtggatttaagacacctatttcttttcttt 243
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 420 ctctgaaggtacgtctatttccactgccatgtggatttaagacacctatttctcttcttt 361
Query: 244 ttaaaacaagtgtaggggctggagagatatgtcagtggttaagagcactgactattctta 303
|||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||
Sbjct: 360 ttaaaacaagtgtaggggctggagagatatctcagtggttaggagcactcactattctta 301
Query: 304 caaaggtcctgagttcagttcccagcaaccacattgtgactcacaaccatctgtaacagg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 caaaggtcctgagttcagttcccagcaaccacattgtgactcacaaccatctgtaacagg 241
Query: 364 atctggtgctttcttctggtgtgtctgaagacggtgacagtgtactcaatacttagaata 423
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 240 atctggtgctttcttctggtgtgtctgaagacagtgacagtgtactcaatacttagaata 181
Query: 424 aatacctcttttttaaaataaataaataaaatttgtaatttttt 467
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 aatacctcttttttaaaataaataaataaaatttgtaatttttt 137
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no177_i06.g1 MSMg01no177_i06.g1 CHROMAT_FILE:
MSMg01no177_i06.g1 PHD_FILE: MSMg01no177_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:06 2005
(288 letters)
>mm_chr3_18202036_18202723
Length = 688
Score = 526 bits (272), Expect = e-154
Identities = 284/288 (98%)
Strand = Plus / Plus
Query: 1 accactgagagaatccagggtaagtcagacgtgtgatttggtgagaagagagaaggcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accactgagagaatccagggtaagtcagacgtgtgatttggtgagaagagagaaggcatt 260
Query: 61 cagacattggatagattatagggggtatgtatcacaactgaaactagagtgaaaaatatc 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagacattggattgattatagggggtatgtatcacaactgaaactagagtgaaaaatatc 320
Query: 121 agatcttttcaaaggcaggtaaaagttaaaattctaactaatggagcagcaccatttgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatcttttcaaaggcaggtaaaagttaaaattctaactaatggagcagcaccatttgtg 380
Query: 181 actgttgtcaggtcttctttgtgcaagctgcatgaatattgctcagctggtgctcttcca 240
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 actggtgtcaggtcttctttgtgcaagctgcatggatattgctcagctggtgctcttcca 440
Query: 241 ttcaagaaactgattggagatcattgttatggatttttttttccaaag 288
|||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 ttcaagaaactgattggatatcattgttatggatttttttttccaaag 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
