BAC Information

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BAC

Clone NameMSMg01-177L10
Chromosome3 (Build37)
Map Location 66,768,025 - 66,768,319
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625048, Veph1, Tpi-rs2, Ptx3, LOC625115
Downstream geneShox2, Rsrc1, Mlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412, EG208426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177L10.T7 (MSMg01no177_l10.b1)MSMg01-177L10.TJ (MSMg01no177_l10.g1)
ACCAG372018AG372019
length710713
length of high quality
(start - end)
295 (379 - 673)567 (77 - 643)
definitionCHROMAT_FILE: MSMg01no177_l10.b1 PHD_FILE: MSMg01no177_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:20 2005CHROMAT_FILE: MSMg01no177_l10.g1 PHD_FILE: MSMg01no177_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAGAGGATCCGCGGA
ATTCCATTCATATCCCTATATCTCCCTCCTCGGATTTAGGTATATATTTT
TATTGTTTCATTTAGCTTTTTCATTATCTTTGGTGAACATTAAACTAAAG
GCTTTGGACACACAAAGCATGCATTATACCACTGAGATGTAGTTCCTAGC
CTCTCTCCTTAGATTTAAAGGAAAGTTTAATATATGATTTTACACACACA
CACACACACACACACACACACACACATGTCTTCTGTGAATCAAGTAAATG
CTGCCCAGATCATTCCATGGATTATTCCCTATTAAAGTACGCTTGCATCT
GGGGATATTTATATGTTGTACCACTGGACATACAGGAGTCTCTAAAATGT
ATCCTTCTTGATTGACTCCTTCTCTCAACTCTTTCTGCGTTTGCAACTTG
CCCTGCCTCCCCATCCCCACCTCAGGTCAACCAGACCTTCTGTTTACTTA
GACTCCCAAGGATGCCAGACTTTCAGGGGAGGTCAGGAAAGGGGAGTCTG
GCAGATTGGAGCAGAAAGGTGAAAAGGCCCTTAAGGCAGTGATACCTGTG
TGGTTGTGCACAGTCAGACTCCTGGAATGAGTACCTCAAAAGAAAGGACA
GAGGGTTGTCTGTGTGGTGTGTGACGTGCGAAGCTTTTTCAGATGACAGC
ATGATAACTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGGACAGCCAAAGCTACAGAGAG
ACCCTGTCTCAAAAATAAAAAAATACACAACAAAACAAAAAAACTTATGA
ATCCTTAAAAAATAAGCCAAGTGAGTATAAAATTAGAACAGCGACCACAC
ACACACACGTACCCATACACACAACCATACAAACAACAGTCTTCTAGAGA
CAAGCATTTCACTTTTTTAAAAAAACTAAATGATATTTTGACTTCTACCT
TTCCAATTTGTATCCCCGTGACCTCCTTTTGTTGTTAAATTGCTCTGGCT
AGGACTTCAAGTACTATATTGAATAGGTACGGAGAAAGTGGACAGCCTTG
TCTAGTCCCTGATTTTAGTGGGATTGCTTCCAGCTTCTCTCCATTTACTT
TGATGTTGGCTACTAAGGTTTGCTGTAGATTTCTTTTATTATGTTTAGGT
ACGGGCCTTGAATTCCTGATCTTTCCAAGACTTTTATCATGAATGGGTGT
TGGATTTTGTCAAATGCTTTGTCAGCATCTAATGAGATGATCATGTGGTT
TTTGTCTTTGAGTTTGCTTATATAGTGTATTACATTGATGAATTTCTAGA
TACTAAACCATCCCCGCATCCGTGGTATGAAACCCATTTGTCCAGAACGG
ACGATTGTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_l10.b1 MSMg01no177_l10.b1 CHROMAT_FILE:
MSMg01no177_l10.b1 PHD_FILE: MSMg01no177_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:20 2005
         (295 letters)



>mm_chr3_66767825_66768519
          Length = 695

 Score =  563 bits (291), Expect = e-165
 Identities = 294/295 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catacaggagtctctaaaatgtatccttcttgattgactccttctctcaactctttctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catacaggagtctctaaaatgtatccttcttgattgactccttctctcaactctttctgc 260

                                                                       
Query: 61  gtttgcaacttgccctgcctccccatccccacctcaggtcaaccagaccttctgtttact 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttgcaacttgccctgcctccccatccccacctcaggtcaaccagaccttctgtttact 320

                                                                       
Query: 121 tagactcccaaggatgccagactttcaggggaggtcaggaaaggggagtctggcagattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagactcccaaggatgccagactttcaggggaggtcaggaaaggggagtctggcagattg 380

                                                                       
Query: 181 gagcagaaaggtgaaaaggcccttaaggcagtgatacctgtgtggttgtgcacagtcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagcagaaaggtgaaaaggcccttaaggcagtgatacctgtgtggttgtgcacagtcaga 440

                                                                  
Query: 241 ctcctggaatgagtacctcaaaagaaaggacagagggttgtctgtgtggtgtgtg 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcctggaatgagtacctcaaaagaaaggacagagggttgtctgtgtggtgtgtg 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)