Query= MSMg01no178_f16.b1 MSMg01no178_f16.b1 CHROMAT_FILE:
MSMg01no178_f16.b1 PHD_FILE: MSMg01no178_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:08 2005
(493 letters)
>mm_chr3_18807771_18808662
Length = 892
Score = 884 bits (457), Expect = 0.0
Identities = 481/489 (98%), Gaps = 1/489 (0%)
Strand = Plus / Plus
Query: 5 gaattcactcaatcactcatgactagctcagatgacagaactcttctactgtagtaaaga 64
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactcaacca-tcatgactagctcagatgacagaactcttctactgtagtaaaga 263
Query: 65 gagcccaatgtctgtggccttgtttaattatctttctgttcccgagtcacttttcttctt 124
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 gagcccaatgtctgtggccttgtttaattatctttctgttcctgagtcacttttcttctt 323
Query: 125 tatctatgctttgatccaagctcctcaaagtagtcccaacgtgaaaaatgcctgggcttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tatctatgctttgatccaagctcctcaaagtagtcccaacgtgaaaaatgcctgggcttg 383
Query: 185 gaatcttgtatttatcaaggtttcacttcacattcccttttctttccctcccttcctcct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 384 gaatcttgtatttatcaaggtttcacttcacattcccttttctttccctccctccctcct 443
Query: 245 ttcttcccttccttcttccttccttcccttccttccttctttcctttcattttatttttt 304
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 444 ttcttcccttccttcttccttcctttccttccttccttctttcctttcattttatttttt 503
Query: 305 gacatgacccaatttgttttggacagggtatatatggtatgtttttagtcagttttgtta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gacatgacccaatttgttttggacagggtatatatggtatgtttttagtcagttttgtta 563
Query: 365 ctgtggcgaacaaaacttgtgttccatcaggaagagctgaaaagaggaaatctgcttttt 424
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctgtgatgaacaaaacttgtgttccatcaggaagagctgaaaagaggaaatctgcttttt 623
Query: 425 ctctcagcttcagagacctccctctgtgcttgggggctccatcactactgggcctatgtg 484
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctctcagcttcagagacctccctttgtgcttgggggctccatcactactgggcctatgtg 683
Query: 485 tgatacgtg 493
|||||||||
Sbjct: 684 tgatacgtg 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 892
Length adjustment: 10
Effective length of query: 483
Effective length of database: 882
Effective search space: 426006
Effective search space used: 426006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_f16.g1 MSMg01no178_f16.g1 CHROMAT_FILE:
MSMg01no178_f16.g1 PHD_FILE: MSMg01no178_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:08 2005
(148 letters)
>mm_chr3_18907259_18907806
Length = 548
Score = 277 bits (143), Expect = 3e-79
Identities = 146/147 (99%)
Strand = Plus / Minus
Query: 1 tttctcctttggggtttcttatttttgaagctttctactaaattcatcaccagataagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tttctcctttggggtttcttatttttgaagctttctactaaattcatcaccagataagac 288
Query: 61 aaatatttgtctaaatgtccatgtaacaaatattttagaaaggtcctggttgccctgatt 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 287 aaatatttgtctaaatgtccatgtaacaaatattttagaaaggtactggttgccctgatt 228
Query: 121 tcatggtgagtaatggttttggtgatg 147
|||||||||||||||||||||||||||
Sbjct: 227 tcatggtgagtaatggttttggtgatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 548
Length adjustment: 8
Effective length of query: 140
Effective length of database: 540
Effective search space: 75600
Effective search space used: 75600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
