BAC Information

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BAC

Clone NameMSMg01-178H04
Chromosome3 (Build37)
Map Location 42,369,782 - 42,514,889
singlet/doubletdoublet
Overlap genenone
Upstream genePhf17, Sclt1, D3Ertd751e, LOC666031, LOC100039204
Downstream geneLOC100039219, LOC677788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178H04.T7 (MSMg01no178_h04.b1)MSMg01-178H04.TJ (MSMg01no178_h04.g1)
ACCAG372529AG372530
length733740
length of high quality
(start - end)		649 (46 - 694)601 (77 - 677)
definitionCHROMAT_FILE: MSMg01no178_h04.b1 PHD_FILE: MSMg01no178_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:15 2005CHROMAT_FILE: MSMg01no178_h04.g1 PHD_FILE: MSMg01no178_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,514,245 - 42,514,889)(42,369,782 - 42,370,382)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACACAACCTACATTAACTTCTTTGATTTAACTTGCTTACCAGAAT
TATAAGTAGGAAAACCATGAGAGTAAAATAACCAGACTTGACTATAGCAT
AAAATGTGCTTCAACCGTGACTTGTGCATGGGGAAGAATTTAATAATTTC
TCTGCCTCCTCTTTTCTGGGATACTTCAAACTTGGTGATAACTAATGTCT
CGTGCTACAGATGTAGGTGATAAGGACACTAGAAAGCTGCAGTGCTTGAA
GGTAGAGGTTACTTGTACAGGGGAACATGGAACCTCCTCACATTCCAGGT
TAGACCACATTTATGTTGTCTATTTCATATCTTCCTCAGCTTAAAAACAT
TTTTACTTATTTTTCAGCTAAGGTGAAATATGAAAATACTATTATTAGCA
TTTGTGGGATTGTGCTATATTGGTTTTTATTTCTACTTTTTTGAGAACAT
CATCATTTATAGCTATGAAAACCTTTCTAATAAAGTAATAGCAATTTATA
AACATTTACGTTTTCCTGATTTTTATCTTAAACTAGACCCCCATAATACG
ATATAATGCAGAAACACAGATAAAATAGGGACATAAATTATGAAAACCGA
ATTCAAGTACCAATCTTTCTTTCTATAGCATAGGAGGAAAGCAGTCACTT
CTGCATTGTCCTAAATGTCTCAGACTTTGCCCT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCATATGGCTGCTAAAGACAGACA
AATAAATGAGTTTCCGATGAGATAAGGCAGCAACATCATCCTGATTTAAA
TGGAGTGCAGCAGCACAACAATGAAAGCCTGCTCAGCTGGTGGAGGGGAT
GCACTTTGTAGAGGGGGATGCCTTTGAGTAGGAGATGATGCGGGAGCTTA
GATTTAAAGGTTGGCCATGTTTACCTGTATGTCAGGATGGCTGTCACTGT
GTGAAGGATAAGTATAATATTTGAGGCATAGTTCATAAGTAGCCATAATA
AATACATAATCAATATAAATATAAATAATACTTCTATGCTTATTTCACTC
ATAATAATCAGCACCTCCATATGTATTCCATGGGAATTTCCCTCATACCA
GCTAATTCTTTATTAACAGTTAAATGACCTATTACACACTTCAATTATAA
TACTATCAGCTTGGAGTTAGCAAAAGCCTACCAATCCATATTTAGTGTCA
CCAGACTGGTTTCCAATTTCAAATGACAGCTACAAGTTCATATTGTTATC
TATGTTTTTTACTTACTGGCTATACACCAGAGATCTCACAACAATTCATT
AAATTAATTTGCAAGAATGACTCCTGGGCCTGAGGTGACACTTACATATT
CACCATTTCAGTATTTGCAAATGAATTGCCTAGTGAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_h04.b1 MSMg01no178_h04.b1 CHROMAT_FILE:
MSMg01no178_h04.b1 PHD_FILE: MSMg01no178_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:15 2005
         (649 letters)



>mm_chr3_42514041_42515089
          Length = 1049

 Score = 1201 bits (621), Expect = 0.0
 Identities = 639/645 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacacaacctacattaacttctttgatttaacttgcttaccagaattataagtag 64
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 gaattcacacaaactaaattaacttctttgatttaacttgcttaccagaattataagtag 790

                                                                       
Query: 65  gaaaaccatgagagtaaaataaccagacttgactatagcataaaatgtgcttcaaccgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gaaaaccatgagagtaaaataaccagacttgactatagcataaaatgtgcttcaaccgtg 730

                                                                       
Query: 125 acttgtgcatggggaagaatttaataatttctctgcctcctcttttctgggatacttcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 acttgtgcatggggaagaatttaataatttctctgcctcctcttttctgggatacttcaa 670

                                                                       
Query: 185 acttggtgataactaatgtctcgtgctacagatgtaggtgataaggacactagaaagctg 244
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 669 acttggtgataactaatgtctcttgctacagatgtaggtgataaggacactagaaagctg 610

                                                                       
Query: 245 cagtgcttgaaggtagaggttacttgtacaggggaacatggaacctcctcacattccagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cagtgcttgaaggtagaggttacttgtacaggggaacatggaacctcctcacattccagg 550

                                                                       
Query: 305 ttagaccacatttatgttgtctatttcatatcttcctcagcttaaaaacatttttactta 364
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 549 ttagaccacatttatgttgtctatttcatatctttctcagcttaaaaacatttttactta 490

                                                                       
Query: 365 tttttcagctaaggtgaaatatgaaaatactattattagcatttgtgggattgtgctata 424
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 489 tttttcagctaaggtgaaatatgaaaataatattattagcatttgtgggattgtgctata 430

                                                                       
Query: 425 ttggtttttatttctacttttttgagaacatcatcatttatagctatgaaaacctttcta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttggtttttatttctacttttttgagaacatcatcatttatagctatgaaaacctttcta 370

                                                                       
Query: 485 ataaagtaatagcaatttataaacatttacgttttcctgatttttatcttaaactagacc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ataaagtaatagcaatttataaacatttacgttttcctgatttttatcttaaactagacc 310

                                                                       
Query: 545 cccataatacgatataatgcagaaacacagataaaatagggacataaattatgaaaaccg 604
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cccaaaatacgatataatgcagaaacacagataaaatagggacataaattatgaaaaccg 250

                                                        
Query: 605 aattcaagtaccaatctttctttctatagcataggaggaaagcag 649
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aattcaagtaccaatctttctttctatagcataggaggaaagcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no178_h04.g1 MSMg01no178_h04.g1 CHROMAT_FILE:
MSMg01no178_h04.g1 PHD_FILE: MSMg01no178_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:15 2005
         (601 letters)



>mm_chr3_42369582_42370582
          Length = 1001

 Score = 1147 bits (593), Expect = 0.0
 Identities = 599/601 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatatggctgctaaagacagacaaataaatgagtttccgatgagataaggcagcaacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatatggctgctaaagacagacaaataaatgagtttccgatgagataaggcagcaacat 260

                                                                       
Query: 61  catcctgatttaaatggagtgcagcagcacaacaatgaaagcctgctcagctggtggagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcctgatttaaatggagtgcagcagcacaacaatgaaagcctgctcagctggtggagg 320

                                                                       
Query: 121 ggatgcactttgtagagggggatgcctttgagtaggagatgatgcgggagcttagattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatgcactttgtagagggggatgcctttgagtaggagatgatgcgggagcttagattta 380

                                                                       
Query: 181 aaggttggccatgtttacctgtatgtcaggatggctgtcactgtgtgaaggataagtata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggttggccatgtttacctgtatgtcaggatggctgtcactgtgtgaaggataagtata 440

                                                                       
Query: 241 atatttgaggcatagttcataagtagccataataaatacataatcaatataaatataaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatttgaggcatagttcataagtagccataataaatacataatcaatataaatataaat 500

                                                                       
Query: 301 aatacttctatgcttatttcactcataataatcagcacctccatatgtattccatgggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatacttctatgcttatttcactcataataatcagcacctccatatgtattccatgggaa 560

                                                                       
Query: 361 tttccctcataccagctaattctttattaacagttaaatgacctattacacacttcaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttccctcataccagctaattctttattaacagttaaatgacctattacacacttcaatt 620

                                                                       
Query: 421 ataatactatcagcttggagttagcaaaagcctaccaatccatatttagtgtcaccagac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataatactatcagcttggagttagcaaaagcctaccaatccatatttagtgtcaccagac 680

                                                                       
Query: 481 tggtttccaatttcaaatgacagctacaagttcatattgttatctatgttttttacttac 540
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 tggtttccaatttcaaatgacagctacaagtccatattgttatctatgttttttacttac 740

                                                                       
Query: 541 tggctatacaccagagatctcacaacaattcattaaattaatttgcaagaatgactcctg 600
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 741 tggctatacaccagagatctcacaataattcattaaattaatttgcaagaatgactcctg 800

            
Query: 601 g 601
           |
Sbjct: 801 g 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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