BAC Information

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BAC

Clone NameMSMg01-178K10
Chromosome3 (Build37)
Map Location 22,878,875 - 22,879,123
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040353, Tbl1xr1, LOC545506, LOC675593, LOC100040378
Downstream geneLOC623751, LOC100039548, EG635702
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178K10.T7 (MSMg01no178_k10.b1)MSMg01-178K10.TJ (MSMg01no178_k10.g1)
ACCAG372671AG372672
length789766
length of high quality
(start - end)
190 (45 - 234)251 (77 - 327)
definitionCHROMAT_FILE: MSMg01no178_k10.b1 PHD_FILE: MSMg01no178_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:30 2005CHROMAT_FILE: MSMg01no178_k10.g1 PHD_FILE: MSMg01no178_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATATCATGTGTGAACTTTTGTGACTAAGTTACCTCACTTAGGATGA
CATCCTCCAGATCCATCCATTTGCCTAAGAATCTCATGAATTCATTGTTT
TAAATAGCTGAGTAGTACTCCATTGTGTAAATATACCACATATTCTGTAT
CCTTTCCTCTGTTGAGGGACATCTGGCTTCTNNTTCCAAATCTTTCTTTG
NCNTTATTATATAATAAAGGCTGGCTATTAAACAATAACCTCCGTGCGGA
AAAAACTTGTTGTCCCATTTCCTTTTATTTTTTACTATTTTCCTTTACTT
AAAACAATTTTTTGTCATGACGGTGTTCTTACTGTTTTTCCTATAAACCC
GTTTTCCCTTCTGGCGACTAAAATACCACTTCTCTTTCGAGAAAAAAAAA
AAACCATCACCATCCCATTGTTGGCTCTTCCTTCAATAAATAACCATATC
CTTACTAAAAATATTCCAGCTTCTCTTTTATCAACTATTTTTCTCCTCAT
TCCCCTTATTCTCTTTATTTTTAAACCCTCTGGTTTTACATTTTTTTCTT
TTTTCCCCATTNCCTANTTTTAATATCGACCTCGCTCTTTCCCCCTTTTA
TCCGTTTATTTTTTTTTTTGTCGCTTCCCCACCCCATTTTCCCCGTTTTT
TTAATTACACCCCTTTCCATAGTTTTCATTATTGTACCCATCAACATAGA
GGTCGCAATTCTTTTCCATTAATTTAGATTATCACGCTN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCTTTTCTTGTGTTCTCAATTCC
ATATTTATTTTATGTTTTGTTTTTCTTTTTAACTAGAATGTCAAGTCTTG
TTCTGTAAGACAGATGGTGCTGGCTGTTTGATTTCCTGTTTCCAGTTTCA
TATTCACTGTGTTAGTGTCACTTCTGTGAAGAGACACTCTGACCACAGCA
ATTCTTATAAAAGAAAACACTTATTTGAGGACTTAAATTGCTGTTTCAAA
GGTTTAGTCTATTTTCATCATTGCTTGAATCATGGCTGTAGGCAGCCCCA
GTGACCAATATTTTTTTTTGACCCCCCCCCCCCCCCCGCAAGATTTATTG
GATAGTTTATTTGTGTTTTCCCCCACAATACAATTATATTATTTTTTACC
CCTGCCCTTCTCTCTATATCCCTCCCCCTTTCAATCTTTCCAATCCCCCC
ATCCCCCCTACCACAAATATACGCTTATCTCCTCTTCTACTTTTTTTTTA
CTATTCTTTTTTTATTCATTTATTTTCTTATCATCTTTCTCTTTTTCCTC
TCCCTTTTATTTTTTTTCCTCTCTTCTCATTTATTCATTTTATCCTCTTA
TCATTTTTCCTCTCATACCCCCATCCTCTACCATTTTATACATTTTTACG
TTAAACTCCAAACTTCGCTCTTTATATAACACAATCCCCTACCCTTTCTT
ATCCCCTCCTAACTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_k10.g1 MSMg01no178_k10.g1 CHROMAT_FILE:
MSMg01no178_k10.g1 PHD_FILE: MSMg01no178_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:30 2005
         (251 letters)



>mm_chr3_22878802_22879453
          Length = 652

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%), Gaps = 1/249 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcttttcttgtgttctcaattccatatttattttatgttttg-tttttctttttaacta 59
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 322 agcttttcttgtgttctcaattccatatttattttatgttttgttttttctttttaacta 263

                                                                       
Query: 60  gaatgtcaagtcttgttctgtaagacagatggtgctggctgtttgatttcctgtttccag 119
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 262 gaatgtcaagtcttgttctgtaagacagatggtgctggctgtttggtttcctgtttccag 203

                                                                       
Query: 120 tttcatattcactgtgttagtgtcacttctgtgaagagacactctgaccacagcaattct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tttcatattcactgtgttagtgtcacttctgtgaagagacactctgaccacagcaattct 143

                                                                       
Query: 180 tataaaagaaaacacttatttgaggacttaaattgctgtttcaaaggtttagtctatttt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 tataaaagaaaacacttatttgaggacttaaattgctgtttcaaaggtttagtctatttt 83

                    
Query: 240 catcattgc 248
           |||||||||
Sbjct: 82  catcattgc 74


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 652
Length adjustment: 9
Effective length of query: 242
Effective length of database: 643
Effective search space:   155606
Effective search space used:   155606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)