Query= MSMg01no179_g19.b1 MSMg01no179_g19.b1 CHROMAT_FILE:
MSMg01no179_g19.b1 PHD_FILE: MSMg01no179_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:26 2005
(516 letters)
>mm_chr3_46898866_46899782
Length = 917
Score = 946 bits (489), Expect = 0.0
Identities = 507/513 (98%), Gaps = 1/513 (0%)
Strand = Plus / Plus
Query: 5 gaattcccaacaaaattctgaagtatcagttgcccttaagaatgcagacctgtcagaatc 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccaacaaaattttgaagtatcagttgcccttaagaatgcagacctgtcagaatc 264
Query: 65 aaatagcaacttcccttaaagaaccacaactcaattttttcacttaatatatctggtttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaatagcaacttcccttaaagaaccacaactcaattttttcacttaatatatctggtttg 324
Query: 125 ggttgattcaaagatgtctccagcacagcattaacaaacactgtaattttctggggtcgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggttgattcaaagatgtctccagcacagcattaacaaacactgtaattttctggggtcgg 384
Query: 185 ataggtccatagctcagagactgaaagtcatattaaattatgctatcagctttcgaaa-g 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 gtaggtccatagctcagagactgaaagtcatattaaattatgctatcagctttcgaaaag 444
Query: 244 ctcattagacttaacccatttaggcgccagtgacttctcggaattaccaatagaactcta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcattagacttaacccatttaggcgccagtgacttctcggaattaccaatagaactcta 504
Query: 304 atcagaaaaccacagaggagtcgggcttctgctatcagaaacctcagtacaattttatgt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atcagaaaaccacagaggagtcgggcttctgctatcagaaacctcagtacaattttatgt 564
Query: 364 attaatatcccacaaagtttgtaggaacacatggtccctgctgagcactacaaccagacc 423
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attaatatttcaaaaagtttgtaggaacacatggtccctgctgagcactacaaccagacc 624
Query: 424 agatagggttacagtcagtcaacccggcaagagctgctggctgctccctgtctgtctcca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agatagggttacagtcagtcaacccggcaagagctgctggctgctccctgtctgtctcca 684
Query: 484 catttggcaactagagagaaaaagacacagagg 516
|||||||||||||||||||||||||||||||||
Sbjct: 685 catttggcaactagagagaaaaagacacagagg 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 917
Length adjustment: 10
Effective length of query: 506
Effective length of database: 907
Effective search space: 458942
Effective search space used: 458942
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_g19.g1 MSMg01no179_g19.g1 CHROMAT_FILE:
MSMg01no179_g19.g1 PHD_FILE: MSMg01no179_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:26 2005
(538 letters)
>mm_chr3_47011113_47012050
Length = 938
Score = 994 bits (514), Expect = 0.0
Identities = 532/538 (98%)
Strand = Plus / Minus
Query: 1 ccatattaaatagcacataactgcttctaaccatgaagtatatatgctttaatttgatga 60
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 851 ccatattaaataggacataactgcttctaactatgaagtatatatgctttaatttgatga 792
Query: 61 tatgatgatatatttaaaaaatatacatagttatatttttaaatgattattttgtgatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tatgatgatatatttaaaaaatatacatagttatatttttaaatgattattttgtgatag 732
Query: 121 agacaaatccgataatttatttttaggaatataatctaagttttccaattcagttgcaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 agacaaatccgataatttatttttaggaatataatctaagttttccaattcagttgcaag 672
Query: 181 ccaacaattcaaatgcaagccatcttgtaaacaataattttatactttgcacaagtattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ccaacaattcaaatgcaagccatcttgtaaacaataattttatactttgcacaagtattt 612
Query: 241 tctttctgtatatatattaaacatatggtagctatttaatatcaggaaacttttcacgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tctttctgtatatatattaaacatatggtagctatttaatatcaggaaacttttcacgta 552
Query: 301 ttagaacaatatttccatatttaatgcatgttttcatattcatcaaccatcatcctcttt 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 551 ttagaacaatatttccatatttaatgcatgttttcatattcattaaccatcatcctcttt 492
Query: 361 ctgtaattttggcaaatacactttatattcatctctaatacattgcaacaaattaaaaag 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 491 ctgtaattttggcaaatacactttatattcatctctaatgcattgcaacaaattaaaaag 432
Query: 421 gggtgggagtctcctgacttaatcaagaaataatctcatcagagatgtacattttatata 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gggtggaagtctcctgacttaatcaagaaataatctcatcagagatgtacattttatata 372
Query: 481 attagatcgtgatttgctttctagaaacctgaccatcaaacccagctgaaaactgaca 538
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 atttgatcgtgatttgctttctagaaacctgaccatcaaacccagctgaaaactgaca 314
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
