CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGG
AATTCTCAACTGAGGTAACCTGAATGGCTGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCATCTCACACCAGTCAAAATGACTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGTGAGGATGTGGAGAAAAAAAAAAAAACACTCCTCCATTGTTG
GTGGGATTGCAAGCTGCTACAACCACTCTGGAAGTCAGTCTGGTGGTTCC
TCAGAAAATTGGACGTAGTACTACTGGAGGATCCAGCAATACCTCTCCTG
GGCATATACCCAGAAGATGTTCCAACTGGTAATAAGAACACATGCTTCAC
TATGTTCATAGCAGCCTTATTTACAATAGCAAGAAGCTGGAAAGAACCCA
GATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACA
ATAGAGTACTACTCAGCTATTAAAAACAATGAATTTATGAAGTTCTTAGG
CAAATGGATGGATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCAC
AAAAGAACTCACATGATATACACTCACTGATAAGTGGGTATTATCCCAGA
AACTTAGAATACCCAAGATACAATTTGTATAACACATGGAAACTCATGAA
GAAGGAATATCAACGTGTGGATACTTTTGTCCCTCTTAAAATGGTGAACA
AN

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCTAGTCTGTCTTATAGAGTG
AGTTCCAGAACAGCCGAGGCTACATAGAGAAACCCTGTCTCAAAAAACAG
AAAAGCTCCCAACTCAAACCAAGCCGAACCAAAAGCAAACAAAACCCAAA
ACAACAAAACACTTTTTCATAATGTATGTTTTCATCATATCGTTCTTCTT
CCCCAAATCCTCTCAGATTCTCCCCACCTCTCTACACACGTGGATTATAT
TTTCTTTCTTTAGACAGAAGAAAACAAAGATCCAAAATCAAACCATTAAA
CAAAAAATCCAAAAGAAAAAAATCACCAAACTAAAGCAAAATAGCNNAAA
AAAAAAAAAAAAAAAAAAAAAGTGCGGCAACTATGGAGTCTGTTTTGTGT
TGGTTAGCCACTGCTGAGCACGTTCTGCCTCGGAGTGTAGTTGATACATC
AGTGACACTTATATTAGTCAGGGTTCTCTAGAGTCACAGAGCTTCTGGAT
AGTCTCTAGATAGTAAGGAAATTGTTGATGACTTAGAGTTTGTAGTCCAT
CTCTCAACAATGGTCAGCAGCAGCTGTGAATGGAATTCCAAGGATCTTAG
CAGGTTGCTCAGTCCCCAGGCAAGCTGGCAAAAGAAATAGAGCAGATTGA
TAGCTAGAGCGACAGCTAGAAATAGATA

Query= MSMg01no179_k16.g1 MSMg01no179_k16.g1 CHROMAT_FILE:
MSMg01no179_k16.g1 PHD_FILE: MSMg01no179_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:44 2005
         (512 letters)



>mm_chr3_79035930_79036842
          Length = 913

 Score =  940 bits (486), Expect = 0.0
 Identities = 507/516 (98%), Gaps = 6/516 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggctagtctgtcttatagagtgagttccagaacagccgaggctacatagagaaaccct 60
           ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 591 caggctagtctgtcttatagagtgagttccagagcagctgaggctacatagagaaaccct 532

                                                                       
Query: 61  gtctcaaaaaacagaaaagctcccaactcaaaccaagccgaaccaaaagcaaacaaaacc 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gtctcaaaaaacagaaaacctcccaactcaaaccaagccgaaccaaaagcaaacaaaacc 472

                                                                       
Query: 121 caaaacaacaaaacactttttcataatgtatgttttcatcatatcgttcttcttccccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 caaaacaacaaaacactttttcataatgtatgttttcatcatatcgttcttcttccccaa 412

                                                                       
Query: 181 atcctctcagattctccccacctctctacacacgtggattatattttctttctttagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 atcctctcagattctccccacctctctacacacgtggattatattttctttctttagaca 352

                                                                       
Query: 241 gaagaaaacaaagatccaaaatcaaaccattaaacaaaaaatccaaaag-aaaaaaatca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 351 gaagaaaacaaagatccaaaatcaaaccattaaacaaaaaatccaaaagaaaaaaaatca 292

                                                                       
Query: 300 ccaaactaaagcaaaatagc---nnaaaaaaaaaaaaaaaaaaaaaaaagtgcggcaact 356
           ||||||||||||||||||||     |||||||||||||||||||||||||||||||||||
Sbjct: 291 ccaaactaaagcaaaatagcaaa--aaaaaaaaaaaaaaaaaaaaaaaagtgcggcaact 234

                                                                       
Query: 357 atggagtctgttttgtgttggttagccactgctgagcacgttctgcctcggagtgtagtt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 atggagtctgttttgtgttggttagccactgctgagcacgttctgcctcggagtgtagtt 174

                                                                       
Query: 417 gatacatcagtgacacttatattagtcagggttctctagagtcacagagcttctggatag 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 gatacatcagtgacacttatattagtcagggttctctagagtcacagagcttctggatag 114

                                               
Query: 477 tctctagatagtaaggaaattgttgatgacttagag 512
           ||||||||||||||||||||||||||||||||||||
Sbjct: 113 tctctagatagtaaggaaattgttgatgacttagag 78


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 913
Length adjustment: 10
Effective length of query: 502
Effective length of database: 903
Effective search space:   453306
Effective search space used:   453306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)