Query= MSMg01no179_p08.b1 MSMg01no179_p08.b1 CHROMAT_FILE:
MSMg01no179_p08.b1 PHD_FILE: MSMg01no179_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:05 2005
(325 letters)
>mm_chr3_16875627_16876350
Length = 724
Score = 572 bits (296), Expect = e-168
Identities = 315/324 (97%), Gaps = 7/324 (2%)
Strand = Plus / Minus
Query: 5 gaattccctgctttttctaatgaaaattactggggaaagtgcattctaagttcaaataat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gaattccctgctttttctaatgaaaattactggggaaagtgcattctaagttcaaataat 465
Query: 65 aattgacaa--aata-ttgttaaaatattaaaggcacttactattgctgtcttactatct 121
||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 464 aattgacaaacaatagttgttaaaatattaaaggcacttactattgctgtctta----ct 409
Query: 122 gtttatagattttcgtaaagattacacaaaatgtaatggaggctcaggagttgctcctgt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gtttatagattttcgtaaagattacacaaaatgtaatggaggctcaggagttgctcctgt 349
Query: 182 tttatcgttagtttacattggtcttaccttgagtctttcctgttataacctctgttgtgg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tttatcgttagtttacattggtcttaccttgagtctttcctgttataacctctgttgtgg 289
Query: 242 tgagtcatatgtatatatgaaacatattgtaaaaggaatctactgtgtccacatgctgct 301
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tgagtcatatatatatatgaaacatattgtaaaaggaatctactgtgtccacatgctgct 229
Query: 302 gtgtttaccgattctttactcact 325
|||||||||||||| |||||||||
Sbjct: 228 gtgtttaccgattcattactcact 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 724
Length adjustment: 9
Effective length of query: 316
Effective length of database: 715
Effective search space: 225940
Effective search space used: 225940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_p08.g1 MSMg01no179_p08.g1 CHROMAT_FILE:
MSMg01no179_p08.g1 PHD_FILE: MSMg01no179_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:05 2005
(286 letters)
>mm_chr3_16753707_16754392
Length = 686
Score = 538 bits (278), Expect = e-157
Identities = 284/286 (99%)
Strand = Plus / Plus
Query: 1 tttagtctgaaaacgcatttctgacattctctaggaataaatgtgaaatgttaatttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagtctgaaaacgcatttctgacattctctaggaataaatgtgaaatgttaatttcct 260
Query: 61 ttccccccatgaaaatgaggctaaaaatggctagtatagaaatcagaagacaaaatggtt 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 ttccccccatgaaaatgaggctaaaaatgtctagtatagaaatcagaagacaaaatggtt 320
Query: 121 tcctctgcatgccttcctgttcccttgggtgccatcccctagagccagggtatcagagca 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 tcctctgcatgccttcctgttcccttgggtgccatcccccagagccagggtatcagagca 380
Query: 181 ggaattgggggtccctgctctgataattgccagtgactggagggagcaatcctcctccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaattgggggtccctgctctgataattgccagtgactggagggagcaatcctcctccca 440
Query: 241 cactctcgccatcctcctcctgtggtgcaataatttacagtgaagg 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactctcgccatcctcctcctgtggtgcaataatttacagtgaagg 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
