BAC Information

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BAC

Clone NameMSMg01-180B08
Chromosome3 (Build37)
Map Location 54,125,825 - 54,126,455
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1, EG666444, LOC100039937, Trpc4
Downstream genePostn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180B08.T7 (MSMg01no180_b08.b1)MSMg01-180B08.TJ (MSMg01no180_b08.g1)
ACCAG373662AG373663
length725726
length of high quality
(start - end)
324 (38 - 361)631 (67 - 697)
definitionCHROMAT_FILE: MSMg01no180_b08.b1 PHD_FILE: MSMg01no180_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:14 2005CHROMAT_FILE: MSMg01no180_b08.g1 PHD_FILE: MSMg01no180_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
GCTAAATGTTACTTTAAAATTTTAAGATATTTTTCTACTGTTAGATTGGA
TGTTGTTGGGCTTGCAGAGATAGATGGCTCAGTGGTTAATAGCATTGACT
TCTCTTACAAAGACCCTGAGTTCAGCTCCCAGAACCCACATGGTACCTCA
TAACAGTTAGTAACTCTAGTTCCAGAGAATCGCGTGCTCTCTTCTGACCT
CTGTGAGCACCTGCGTGTGTATGCTGTACATAAACTGTCACAGGTGCGCA
CATACATGCAAATAATTAAATATTTTTTAAAAAGAAATTTTAAGTTCTGT
TTTCTAGGCAGCTGAGTAGATATCTATTTTTGTTACCTAAGAAAAGCATC
TTTTACTCATCAATAGAGACACCATTGTTGTCGATAATGATTGTGCGTTT
GATAGCATGCATGATGCCTGACTTAATTGGCATGCAAATGCTCACACTCT
GCTTTCTCTGTATGCTTCTAGAGATGATGATGGACTAGCATGGCCTGAAG
CATGGCTCAGTTCTATTACAAAAGAAATGTCAACGCCCCCTACAGAGACC
GCATCCCACTGAGGATTGTCAGAGCAGAGTCTGAACTCTCACCATCAGAG
AAAGCCTACTTGAATGCTGTGGAGAAGGGGGACTATGCAAGCGTCAAGAA
GTCTCTGGTTGAAGCTGAGATTTAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCATGCAGACTGCTTTATTCAAATGTGCATCCCTA
AGAGATCAAAGGTTTCGAGCTGGTTTCACTGTGATACCTTCAGTTCTGGC
CAGGCCAGAGACGTGGGGTTGCATCCTGCCCTGGTATCATGGCCTCAGCA
TGGCTCAGCTTCTCATGTCCAGCCTTATTATTTTCTAACAGAGAGGTCTT
CATACTGGGTATATCTTATTGACATCAAAATGCATATAGATGTTTTACAG
AAATCTACATTAGAAGTGAAACAAACTAGGTACTTTTAGAAACATTTAGA
AAGAGGCTTTAAGATCTGTTAAAACAATTTTGTGCAAAAGCAAAATATAA
GCTGATTTAGCTTGGCTTGGGGTTGTAAAAAGCTCGGATACCAGCAGGTG
TCTTTCTTCTACTGAGGGAACTGTAAAGAAGTAACAGAATTCTATCTGCC
AAAGGTACAAAGAATCTGAAGCCTCCATCCAAACATCCAGTAGAGAGTTG
AAGGCTTAGCTATTGCTTAGATCTTGGTTTAAGCTTCAACTCAGCCACTG
AACGTCAAGACAAATACAGAGAGTCTCCATAACTCTCACGAGCCTTTTCT
TCTTTGGTTGTCTATGGAAAATTTATTTGAGACACTTTAAATATTTAAGC
GTAGAATTCAAATAAATAACACATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_b08.g1 MSMg01no180_b08.g1 CHROMAT_FILE:
MSMg01no180_b08.g1 PHD_FILE: MSMg01no180_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:15 2005
         (631 letters)



>mm_chr3_54125625_54126655
          Length = 1031

 Score = 1166 bits (603), Expect = 0.0
 Identities = 624/631 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgcagactgctttattcaaatgtgcatccctaagagatcaaaggtttcgagctggttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 catgcagactgctttattcaaatgtgcatccctaagagatcaaaggtttcgagctggttt 772

                                                                       
Query: 61  cactgtgataccttcagttctggccaggccagagacgtggggttgcatcctgccctggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 cactgtgataccttcagttctggccaggccagagacgtggggttgcatcctgccctggta 712

                                                                       
Query: 121 tcatggcctcagcatggctcagcttctcatgtccagccttattattttctaacagagagg 180
           ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 711 tcatggcctcagcttggctcagcttctcatgcccagccttattattttctaacagagagg 652

                                                                       
Query: 181 tcttcatactgggtatatcttattgacatcaaaatgcatatagatgttttacagaaatct 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tcttcatactgggtacatcttattgacatcaaaatgcatatagatgttttacagaaatct 592

                                                                       
Query: 241 acattagaagtgaaacaaactaggtacttttagaaacatttagaaagaggctttaagatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 acattagaagtgaaacaaactaggtacttttagaaacatttagaaagaggctttaagatc 532

                                                                       
Query: 301 tgttaaaacaattttgtgcaaaagcaaaatataagctgatttagcttggcttggggttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tgttaaaacaattttgtgcaaaagcaaaatataagctgatttagcttggcttggggttgt 472

                                                                       
Query: 361 aaaaagctcggataccagcaggtgtctttcttctactgagggaactgtaaagaagtaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aaaaagctcggataccagcaggtgtctttcttctactgagggaactgtaaagaagtaaca 412

                                                                       
Query: 421 gaattctatctgccaaaggtacaaagaatctgaagcctccatccaaacatccagtagaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gaattctatctgccaaaggtacaaagaatctgaagcctccatccaaacatccagtagaga 352

                                                                       
Query: 481 gttgaaggcttagctattgcttagatcttggtttaagcttcaactcagccactgaacgtc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gttgaaggcttagctattgcttagatcttggtttaagcttcaactcagccactgaacgtc 292

                                                                       
Query: 541 aagacaaatacagagagtctccataactctcacgagccttttcttctttggttgtctatg 600
           |||||||||||||||||||||||||| |||||| ||||||||||||||  ||||||||||
Sbjct: 291 aagacaaatacagagagtctccataaatctcacaagccttttcttcttcagttgtctatg 232

                                          
Query: 601 gaaaatttatttgagacactttaaatattta 631
           |||||||||||||||||||||||||||||||
Sbjct: 231 gaaaatttatttgagacactttaaatattta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)