XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAAA
ATCTCCACTGAACATGACAATATCTATGGCTCAGATCTAAGGTGAAATGT
GTGAAGATATAATTGTAGTCAAGATAAAAGAAGGAAAGGAGAAATTGTTT
TATTTCTTCAGTAACACTGAAGGTTCAAAGAGAATCAGAACCTATAAGTC
CTGCATTCTATCTTGGCAGAACCAATGAACTATTCTTTGTGATGTGACGG
TTATCATTGCATACTCTACTTGGCATAGAATACAGGGTACTTGATTTTGA
GGAAGTTAAAAATCACATAGTTCATTCTACACATATATTGAATGTGTTGT
ACTATAGATTTCTTATTTATGATTTAAACCTAGCCCTCCCAATCCTAATG
CTTTGAACATATGGTAACATTTATTGTCAATGTAATTCATAAGGAATTTG
AATATGACCATGAACAATCAAAACTTTTAACAATTAGTTCAAAACACTTG
TTATGATTTCAATATTCTTCCCTGTTTCCTGAAAACTATAAGCAATGGAT
TTCACTGAATTTGCAATGAAAAAATATCAGTAATCTTTACCAAAACAAAG
GCTGAAACTTATGTCCCTTCAAGTAGAAATCAGATTTTTTTGTTGTTGTT
GTATCAAAAGAAGACAGTATTTCACATACCCTATACTGTTGAATATAAAA
GCTGAGGTAAGTCGTCATACTTTGACCAAGGTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGGAATGATGATTTCCCCTAGAAGTTCTTTTATT
GTTGAGAAGAGTTCTCACTATCCTGTGTTTTTTGTTATTCCAGTTGAATT
TGCATAGTGTTCTTTTTAACCCTATTAATAATTCAGTTGAAATTTTGATT
GGAATTGCATTGATTCTGTAGATTGCTTTTGGCAAGATGACCATTTTTAC
TATATTAATCCTGCCAATCCAATAGCATGGGAGAACTTTCCATTTTCTGA
GATCTTCTTCAATTTCTTTCTTCAAAGACAACAAGTGATCACATCTAAAG
GCCTTATTGTTCGGTGTGATATGGGTGGAATATAGACCCCTTTAATGTCA
AGCACACCTCTGAATTTAAGGCCAGCCTGGTATAGAGAAAGTTAAAGGTA
AAAAAAAAACATAGGTCCAGGTGTGCTGGTATTTGCCTTTAATCTCAGCA
TTCAAGAGACAGATGCATGCAGGTCTTTGAGTTCTAATCAGCCAGTTACA
CTGAGGCAGTGAGTTAAGAGACAGTGCAATGGAGTGGAATTTGTGTTAAT
TTATATCGTGCCCTCCCGATACAGATTATTCGAGCCCCCTTTCCATCCTA
TTTCATTCAACCTACTTTTTCCCACCCCTTATTTACACGTTTTTTTCCGT
TTTCCGATCTTTATCTTATAATTCTTCTC

Query= MSMg01no180_p14.b1 MSMg01no180_p14.b1 CHROMAT_FILE:
MSMg01no180_p14.b1 PHD_FILE: MSMg01no180_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:20 2005
         (674 letters)



>mm_chr3_112445692_112446767
          Length = 1076

 Score = 1222 bits (632), Expect = 0.0
 Identities = 662/672 (98%), Gaps = 2/672 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaaaatctccactgaacatgacaatatctatggctcagatctaaggtgaaatgt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 gaattctaaaatctctactgaacatgacaatatctatggctcagatctaaggtgaaatgt 817

                                                                       
Query: 65  gtgaagatataattgtagtcaagataaaagaaggaaaggagaaattgttttatttcttca 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 gtgaagacataattgtagtcaagataaaagaaggaaaggagaaattgttttatttcttca 757

                                                                       
Query: 125 gtaacactgaaggttcaaagagaatcagaacctataagtcctgcattctatcttggcaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gtaacactgaaggttcaaagagaatcagaacctataagtcctgcattctatcttggcaga 697

                                                                       
Query: 185 accaatgaactattctttgtgatgtgacggttatcattgcatactctacttggcatagaa 244
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 696 accaatgaactattctttgtgatgtgacagttatcattgcatactctacttggcatagaa 637

                                                                       
Query: 245 tacagggtacttgattttgaggaagttaaaaatcacatagttcattctacacatatattg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tacagggtacttgattttgaggaagttaaaaatcacatagttcattctacacatatattg 577

                                                                       
Query: 305 aatgtgttgtactatagatttcttatttatgatttaaacctagccctcccaatcctaatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aatgtgttgtactatagatttcttatttatgatttaaacctagccctcccaatcctaatg 517

                                                                       
Query: 365 ctttgaacat-atggtaacatttattgtcaatgtaattcataaggaatttgaatatgacc 423
           |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 516 ctttgaacataatggtaacatttattgtcaatgtaattcaaaaggaatttgaatatgacc 457

                                                                       
Query: 424 atgaacaatcaaaacttttaacaattagttcaaaacacttgttatgatttcaatattctt 483
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 456 atgaacaatcaaaacttttaacaattagttcaaagcacttgttatgatttcaatattctt 397

                                                                       
Query: 484 ccctgtttcctgaaaactataagcaatggatttcactgaatttgcaatgaaaaaatatca 543
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ccctgtttcctgaaaactatgagcaatggatttcactgaatttgcaatgaaaaaatatca 337

                                                                       
Query: 544 gtaatctttaccaaaacaaaggctgaaacttatgtcccttcaagtagaaatcagattttt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gtaatctttaccaaaacaaaggctgaaacttatgtcccttcaagtagaaatcagattttt 277

                                                                       
Query: 604 ttgttgttgttgtatc-aaaagaagacagtatttcacataccctatactgttgaatataa 662
           |||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 276 ttgttgttgttgtatcaaaaaaaagacagtatttcacataccctatactggtgaatataa 217

                       
Query: 663 aagctgaggtaa 674
           ||||||||||||
Sbjct: 216 aagctgaggtaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1076
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1066
Effective search space:   707824
Effective search space used:   707824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)