Query= MSMg01no181_d06.b1 MSMg01no181_d06.b1 CHROMAT_FILE:
MSMg01no181_d06.b1 PHD_FILE: MSMg01no181_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:37 2005
(464 letters)
>mm_chr3_156445442_156446304
Length = 863
Score = 837 bits (433), Expect = 0.0
Identities = 457/465 (98%), Gaps = 3/465 (0%)
Strand = Plus / Minus
Query: 1 agagatattcaagaatttaaaaataaaatattttgacaattttagaaagatactttaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 agagatattcaagaatttaaaaataaaatattttgacaattttagaaagatactttaagt 638
Query: 61 atctatgtaaaataattgtccttttttttttctctcaaaaagaagatgcagaaactctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 atctatgtaaaataattgtccttttttttttctctcaaaaagaagatgcagaaactctga 578
Query: 121 taatttctcctgaactgagggaattaaatcacagagaaagatcatacaagactatctggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 taatttctcctgaactgagggaattaaatcacagagaaagatcatacaagactatctggc 518
Query: 181 tttgtgacttacaggaaaatcccatctattgtttgaagaactctaatacagtgttaaatg 240
|||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 517 tttgtgacttacaggaaagtcccatcta-tgtttgaagaactctaatacagtgctaaatg 459
Query: 241 aattcaattagacataacacaagatcctgtagttgtgctttgactaaccataatttggat 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aattcaattagatataacacaagatcctgtagttgtgctttgactaaccataatttggat 399
Query: 301 acccaaaccaaacaaggaaacaataataacaggaaattatgaataactattttaaatata 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 398 acccaaaccaaacaaggaaacaataataacaggaaattatgaataattattttaaatata 339
Query: 361 tgttaattcaaaaattctgatgcaaactaagtcaggaagtatataaaaatacactttaaa 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 338 tgttaattcaaaaattctgatgcaaactaagtcaggaagtatacaaaaatacactttaaa 279
Query: 421 tatgttacatctagttccaggattcttttgt-tagattattaaca 464
||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 278 tatgttacatctagttccaggattc-tttgtatagattattaaca 235
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 863
Length adjustment: 10
Effective length of query: 454
Effective length of database: 853
Effective search space: 387262
Effective search space used: 387262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_d06.g1 MSMg01no181_d06.g1 CHROMAT_FILE:
MSMg01no181_d06.g1 PHD_FILE: MSMg01no181_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:37 2005
(546 letters)
>mm_chr3_156378638_156379579
Length = 942
Score = 1013 bits (524), Expect = 0.0
Identities = 536/542 (98%), Gaps = 4/542 (0%)
Strand = Plus / Plus
Query: 5 gaattcagcctgtatctccagtgttcagggaggaattcttctctctgtctagcacaatga 64
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcctgtatctccagtgtccagggaggaattcttctctctgtctagcacaatga 264
Query: 65 tcagtctgctgaaaatatcatttaccatttggcaggaggattacccaatcagttcatacc 124
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcagcctgctgaaaatatcatttaccatttggcaggaggattacccaatcagttcatacc 324
Query: 125 acaatagcacgttggaggcaagagacaaggcctgtttttccaatacacttatcatagtct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaatagcacgttggaggcaagagacaaggcctgtttttccaatacacttatcatagtct 384
Query: 185 gagaagatccccacaaattctctacaactgttcagagggcattgcagcatggaatcttag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagaagatccccacaaattctctacaactgttcagagggcattgcagcatggaatcttag 444
Query: 245 cctgacagctctctggagagctgggacactttgagaagtaagaactagacagagggcccc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctgacagctctctggagagctgggacactttgagaagtaagaactagacagagggcccc 504
Query: 305 aaagcttcccctccattctcttgtttactaaggaagcacgggtgtcagagtgctctgctc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaagcttcccctccattctcttgtttactaaggaagcacgggtgtcagagtgctctgctc 564
Query: 365 tctctagttttcatgggccaagagttcaggtcaggaaagcttagcagtgtgtgcagagag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctctagttttcatgggccaagagttcaggtcaggaaagcttagcagtgtgtgcagagag 624
Query: 425 ccagcttgcttcctgctttaaaaaaaaaaaaaaaagacataaaacatgcaaattgtcagg 484
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 625 ccagcttgcttcctgctttaaaaaaaaaaaaaa----cataaaacatgcaaattgtcagg 680
Query: 485 atcctgtaggaaaactaggcacttagatgggtttcttgggctcataaaattaaagtacct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atcctgtaggaaaactaggcacttagatgggtttcttgggctcataaaattaaagtacct 740
Query: 545 ct 546
||
Sbjct: 741 ct 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 942
Length adjustment: 10
Effective length of query: 536
Effective length of database: 932
Effective search space: 499552
Effective search space used: 499552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
