Query= MSMg01no181_d08.b1 MSMg01no181_d08.b1 CHROMAT_FILE:
MSMg01no181_d08.b1 PHD_FILE: MSMg01no181_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:38 2005
(288 letters)
>mm_chr3_120313311_120313998
Length = 688
Score = 542 bits (280), Expect = e-158
Identities = 286/288 (99%)
Strand = Plus / Minus
Query: 1 atttgtgattgaaatagaattacaccactctccccgtcctttcctttacaccctcccagc 60
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 333 atttgtgattgaaatagaattacaccactctccccttcctttcctttagaccctcccagc 274
Query: 61 taacctccttcagatttaccccacttgtgagttgtcggattcttgattaccattgctatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 taacctccttcagatttaccccacttgtgagttgtcggattcttgattaccattgctatg 214
Query: 121 tgtttttacaagtatatgtgagtacagctggctgagtcagtttgtgttgtttgtgtgtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tgtttttacaagtatatgtgagtacagctggctgagtcagtttgtgttgtttgtgtgtat 154
Query: 181 ataccatttcaaggctgaccacccttcattagacagccaataaagagactcatccctggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 ataccatttcaaggctgaccacccttcattagacagccaataaagagactcatccctggg 94
Query: 241 aaggctgggtctccttaatctagcagtcactagctgcctgtagctcct 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 aaggctgggtctccttaatctagcagtcactagctgcctgtagctcct 46
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no181_d08.g1 MSMg01no181_d08.g1 CHROMAT_FILE:
MSMg01no181_d08.g1 PHD_FILE: MSMg01no181_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:38 2005
(234 letters)
>mm_chr3_120242589_120243218
Length = 630
Score = 339 bits (175), Expect = 1e-97
Identities = 215/231 (93%), Gaps = 6/231 (2%)
Strand = Plus / Plus
Query: 4 ggaattctcttgatgattgcttcgataatatattttaaaaattaagaacattgagaaaag 63
|||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctcaacgattgcttggataatatattttaaaaattaagaacattgagaaaag 263
Query: 64 gtggaaatttgatgtgatgttaacaacaaacatgaggactggtaacagagttcaataatg 123
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 264 gtggaaatt-----tgatgttaacagcaaacatgaggactggtaacagagttcaataatg 318
Query: 124 atgagcttgcctggtttaatcctcagtactgcagaaagaaacaaagacagtaacagtgaa 183
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 319 atgagcttgcctagtttaatcctcagtactgcagaaagaaacaaagacagtaacaatgaa 378
Query: 184 gatgagagtatattaagagggaaaaagaa-ggaaggagggagggagggaag 233
||||||||||||||||||||||||||||| ||||||| ||| ||| |||||
Sbjct: 379 gatgagagtatattaagagggaaaaagaaaggaaggaaggaaggaaggaag 429
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 630
Length adjustment: 9
Effective length of query: 225
Effective length of database: 621
Effective search space: 139725
Effective search space used: 139725
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
