BAC Information

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BAC

Clone NameMSMg01-181G01
Chromosome3 (Build37)
Map Location 137,442,565 - 137,442,849
singlet/doubletsinglet
Overlap genenone
Upstream genePpp3ca, LOC668870, LOC100039447, Emcn, EG229862, Ddit4l, LOC668874
Downstream geneH2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1, Tspan5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181G01.T7 (MSMg01no181_g01.b1)MSMg01-181G01.TJ (MSMg01no181_g01.g1)
ACCAG374571AG374572
length800757
length of high quality
(start - end)
144 (44 - 187)287 (72 - 358)
definitionCHROMAT_FILE: MSMg01no181_g01.b1 PHD_FILE: MSMg01no181_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:50 2005CHROMAT_FILE: MSMg01no181_g01.g1 PHD_FILE: MSMg01no181_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTTGTGCTATTACCACCTGATTGTGCTCCACGGCCTCCAACACACTAAAT
GAAGAGTTGTGTGAGTTTTCATCTTTTTCCACATTCCTACCAGGACCGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATTTCTTTTTTTTTTT
TTTTTTCTTAATTACACTTTCTCCTTCTCCATATCTTCTCTCTTTTAAAT
TTTTTTTTTTTTTTTTTTTTTTTTTTACTAAATCTTTTTCTTCTTCTTTT
CTTTCCTCCTATTCTTTTTTTTTTTTTTTTTTCATTTTTTTTTTTCTTTT
ACCTTTTTTTTTTCTTTCTTCTTCCTTCCTTTTTCTTATTTTTTTTTCTT
TTTTTTTTTTTTTTCCCCCCCTTTCTTTTTTTTTTCTTTTCAACTATATT
AATTATTTAACATTTTCCCCTTTCTCTTTTCTCCCTTTTTTTTTTTTTCT
ATCTCTTTTCTACATTCTTCCTTTCTTTTCCCATTTATTCTTCTTTTTTT
TATTCCTTTTATCTTCCTTTTCCTTTTTTTTTTTCACCTCTTATTTTCTC
TTCCTCCCCTTTTTCTTTTNCCCCACATCCCACTTATTTATTTTCCTCCC
TTTTCTCCATTTTTTTCTTTCCGCCTCTTTTTCTTTCTCCCCCCCTTTCA
TTTCTTTTTTTCCTCTTTCATTTTTTTCCCTTCTTTTCTCTTTTCTCTTT
TCCTTTTATCCCTTTTCCAATTCTTTTTCCACCTTTTTTTTCTTCTTTCG

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTCCAAGTGGCTTGTTTGTTTGTTTGTT
TTGAAGCATGCAATATGATCATTTCTTCAAGTAAAATGTTTCATAATTTG
TGCTGTCCGAATGACATCTAAGCTTTCTGTCTTAGGTTATTAAGTAGCTT
ACTGTACCCGAGTTAGCACCCAGTTTGCTTCTGGTGAGGGGGAGTTCTGC
GTAGTCTGTGTGGAGAAATGGAGGCGCAAGTGGCCATGTGAAAAAGGGGT
GCTGTCTAAACTTTGAGGAAATTAATTAAGTTTGATTGTGTGTGTGTGTG
TGTGTGTTTTTTTCCCCCCCCCCCCCCCTTNNTTTTTTTTTCTTTCTTTT
TTTCTTTTCCTTCCCCCCAAATAAAAAAAAAATTTTTCCTTTTTCCCCCC
CCTTCCTTTCCTCACCTTTCTTTTTTACTTTTTCTTCTTCCCCCCTTCTT
TCATTTCACCTCTATCCCTATTTCCTTACTCATCTATTTATTCTCATCCT
TTCCTTCCTTTCATATACAATTATTATATTTTTCTTCTCTTTTCTTTCCC
TCCTCTTTATCTATCCCTTTTATATTCCTTTATTCCCATCCCTATACTAT
CCCTAATATCCTCTTCTACCCTTCTCTCTTTCCCTCTTTTCTCTTTCTAT
TTCCACCTTCTTCTCTCTATTATACTCTTTTTTTCCACTCATCTTCTTAC
TTCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_g01.g1 MSMg01no181_g01.g1 CHROMAT_FILE:
MSMg01no181_g01.g1 PHD_FILE: MSMg01no181_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:50 2005
         (287 letters)



>mm_chr3_137442386_137443071
          Length = 686

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%), Gaps = 1/286 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attccaagtggcttgtttgtttgtttgttttgaagcatgcaatatgatcatttcttcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 attccaagtggcttgtttgtttgtttgttttgaagcatgcaatatgatcatttcttcaag 405

                                                                       
Query: 61  taaaatgtttcataatttgtgctgtccgaatgacatctaagctttctgtcttaggttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 taaaatgtttcataatttgtgctgtccgaatgacatctaagctttctgtcttaggttatt 345

                                                                       
Query: 121 aagtagcttactgtacccgagttagcacccagtttgcttctggtgagggggagttctgcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aagtagcttactgtacccgagttagcacccagtttgcttctggtgagggggagttctgcg 285

                                                                       
Query: 181 tagtctgtgtggagaaatggaggcgcaagtggccatgtgaaaaaggggtgctgtctaaac 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 284 tagtctgtgtggagaaatggaggcgcaagtggccatgtgaaaa-ggggtgctgtctaaac 226

                                                         
Query: 241 tttgaggaaattaattaagtttgattgtgtgtgtgtgtgtgtgtgt 286
           ||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 225 tttgaagaaattaattaagcttgattgtgtgtgtgtgtgtgtgtgt 180


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 686
Length adjustment: 9
Effective length of query: 278
Effective length of database: 677
Effective search space:   188206
Effective search space used:   188206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)