BAC Information

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BAC

Clone NameMSMg01-182A08
Chromosome3 (Build37)
Map Location 20,122,260 - 20,122,506
singlet/doubletsinglet
Overlap geneCpa3
Upstream genePde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg
Downstream geneEG664965, LOC100040283, Cpb1, Agtr1b, EG665094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182A08.T7 (MSMg01no182_a08.b1)MSMg01-182A08.TJ (MSMg01no182_a08.g1)
ACCAG375018AG375019
length699727
length of high quality
(start - end)
249 (74 - 322)293 (72 - 364)
definitionCHROMAT_FILE: MSMg01no182_a08.b1 PHD_FILE: MSMg01no182_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:39 2005CHROMAT_FILE: MSMg01no182_a08.g1 PHD_FILE: MSMg01no182_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCCTGTAACAAAGAGAAGACATTCAGTCTCAAGACAGGTGAT
TTATACCAGTTCTCTAAGAGTCAAGGGTGGGGCTTAATGGGAACTGGTGT
GAATCTGGTTCTCTAAGTCTTGAGAGGATTGTAATCTGTTTTTCTGTGGC
CTAGAAAAGGAGGACAAATTAGGCTAAGAGTTCTCCACTAGACAGTCTGT
GCACATATGTGCACAAAGCCTCTAGTGACTGTGTAACAGGAGGTACCTGG
TGTTTTAAGCATCAAGTGAATTTTTTTCAGAAGAGGCAGTGGAGGAGCTG
GTAGACAGCACATTCTGATCCCATCCACGTTTCTTCTGTAGCTTCTCCAA
ACACCAACAAACCATGCCCCAATGTCTACAGGGGACCTGCACCAGAGTCT
GAGAAAGAGACAAAAGCTGTCACCAACTTCATTCGAAGCCATCTGAATTC
AATCAAGGCTTATATCACTTTCCATTCCTACTCGCAGATGCTATTAATTC
CTTATGGCTACACATTCAAACTGCCTCCTAACCACCAGGACCTGGTACGT
ATAAATAAATAAATAAATAAATGAATAAATGAATAAATAAATAAATAGAT
AAATCCCTCTGGTGTGTAGATTGACACCATCATTGACTCTCTCTCTCTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTAACCCTCCACTTTAGCCACTGGGCCATC
TCTACAGCCTGCAAATTTACTCTTCTTTATTTTGAGACAGTGTGGAGCTT
GCTGTATGAGACTTGAACTCAGAGATCTACCTGCCTCTGCCTGTAGGGTC
CTGGGATTAAAGGTGTATGCCATCATGAGGAACAATGCACTTGATAGTTT
TTTACAATTTAAACTTTTTAGTTTTTTGAGATCATAATATTGCATCTTTC
CCTTTCCTTGCTCTAAACCCTCATGTGCCCTGCTTTCTTTTAAAATCATG
AACTTTTTTATTACAATAACTGTTGTTATTGTAAGTGTTTCTGCTCAGAA
GGAAGGGTAACCTGCGACTAGGATGCCCGGGAGCACACAGCTCCGAGGTG
GGACAGTGTCCCAGTGGAAGGCCATCCTGAGAAGACAGGAACCACACAGC
TCTGAGAGGAAGCCGCCTCAGCAGAGGCATTGCAGCTCGCAGGGAGGCAA
TCCCAGCTGAGCTGAGGAGCTCAGGTCCTCAGCCCAGCTCCTTCGTTTCA
CTTCCCTCCATTGCTTTGTTTCTTCTTGGATTCTTCTGATAAGAAACCCT
CACCATACTTGACACCCCATGACCCAGATTTATTGGAGGCTTCTGCTTGG
TCGCGCTTCCTACCCACGTTTTCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_a08.b1 MSMg01no182_a08.b1 CHROMAT_FILE:
MSMg01no182_a08.b1 PHD_FILE: MSMg01no182_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:39 2005
         (249 letters)



>mm_chr3_20122060_20122708
          Length = 649

 Score =  462 bits (239), Expect = e-135
 Identities = 245/247 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagacattcagtctcaagacaggtgatttataccagttctctaagagtcaagggtggggc 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aagacattcagtctgaagacaggtgatttataccagttctctaagagtcaagggtggggc 388

                                                                       
Query: 61  ttaatgggaactggtgtgaatctggttctctaagtcttgagaggattgtaatctgttttt 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttaatgggaactggtgtggatctggttctctaagtcttgagaggattgtaatctgttttt 328

                                                                       
Query: 121 ctgtggcctagaaaaggaggacaaattaggctaagagttctccactagacagtctgtgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctgtggcctagaaaaggaggacaaattaggctaagagttctccactagacagtctgtgca 268

                                                                       
Query: 181 catatgtgcacaaagcctctagtgactgtgtaacaggaggtacctggtgttttaagcatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 catatgtgcacaaagcctctagtgactgtgtaacaggaggtacctggtgttttaagcatc 208

                  
Query: 241 aagtgaa 247
           |||||||
Sbjct: 207 aagtgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)