BAC Information

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BAC

Clone NameMSMg01-182M21
Chromosome3 (Build37)
Map Location 50,939,566 - 50,939,932
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
Downstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3, LOC433587
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182M21.T7 (MSMg01no182_m21.b1)MSMg01-182M21.TJ (MSMg01no182_m21.g1)
ACCAG375583AG375584
length743650
length of high quality
(start - end)		372 (45 - 416)69 (95 - 163)
definitionCHROMAT_FILE: MSMg01no182_m21.b1 PHD_FILE: MSMg01no182_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:39 2005CHROMAT_FILE: MSMg01no182_m21.g1 PHD_FILE: MSMg01no182_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCTATTCCTCATGGGAGAGAGAGGCACATTTGTAAAATTAAAAG
TCAATGCCTCTTTGATGAGAGGATTTGCCGGCTCTTCTGTCCTTTTTAAA
AACACTGTGTGCTTGGCAGGAAGAGCCAAGAAACTAAACCTCTCCTCAAG
GACATTGGGGGTGAGCAGGAGCAAGCCGCTTGCTTTTCTTCTTTCAGATC
TCAAGGCCGTGCGAGCCCTTTTCTAAAAGAACTAGGTAGGTGGTAGGTGG
CATTGACTGGCTGTTCTGAGGAACATGGCCTTGTCTGCGTGGCTTGATAA
TATCTGTTAATTCAGAGGAGAAAAACATCTTAGCTGTGGCAATGGCATTG
TGCCACTAAAACAAACCCCCACTGCAGCTTTCTTTGCCTTTTTGGATTTT
CCTCTTTTGAGACAGGTCTCATGTAACACTGTCTGCCTTCAGACTTGCTG
TGTAGCCCAGGTGACTTTACACTTTTCATCCCCCTGCCTCTACCTCTGCA
TGCTGGGACTCCAGGTGTGTACTGCCATGCCAAGTTTGTGCACCACTGGT
TATCGCACCCACCCCCCCGTGCATACTACTCAAGTACCATTCTTCTCGCA
TGACCACTTTTACCTCCTAGGTTTTATTGTCTTCATGTTCTGTTCTGTAA
CAACCAAAAATCGCAATAAATCTTTTCCTCCAAAATATACCCC

NTTCAAAATACAAAAAANNNNCCCATGAXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGC
TTGCTGGTCTACCACTCCATCCAGCCAGCAAGTTCCAGGTCAGCTTAAGA
CCCTGCTTGAAACTAAGGTGGAGGGGCTGTAGAGATGCTCAGTGAGTCAG
ACACTTGCCGCTCTTACGAGGACAGGGATTGCTCCCCACACCCATGCTGT
GTGGCTCATGGCTTGCTGGGTTGGGGAAAACCTATTTCTAGAACACCTTT
GAGCAAAACTTTAACCCCGCCCCTAACCGGAATTTCCTTGTGGCGGATTC
AAGGGGGGGGTCCCCCCCCCAAAATCCCCATTTTATAAAAACCCAGGGGG
CCTTTTATTGGGGGGGGACTTTTTTAGGGGGAAAAAGGGGGGGAATCCCC
CCCCCCCCAGAGGGGGAAAAAAAAAATTTTTTTTTTGGGGCAGGGTCCCC
CCTCCCCCTAATAATCTCCCCCCCCCCCTTGTGTTTTTTTTTGGGGCGCC
CTTTCTTCTAAAAATATTTTTTTGGACCCCACGGTGCTCCCCCTATTTAA
AATATTTTTGGGGGGGTGGCCTCCTCCTCGTTTGGTCCTTTTTTGTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_m21.b1 MSMg01no182_m21.b1 CHROMAT_FILE:
MSMg01no182_m21.b1 PHD_FILE: MSMg01no182_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:39 2005
         (372 letters)



>mm_chr3_50939362_50940133
          Length = 772

 Score =  694 bits (359), Expect = 0.0
 Identities = 365/367 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctctattcctcatgggagagagaggcacatttgtaaaattaaaagtcaatgcc 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gaattctctctattccttatgggagagagaggcacatttgtaaaattaaaagtcaatgcc 512

                                                                       
Query: 65  tctttgatgagaggatttgccggctcttctgtcctttttaaaaacactgtgtgcttggca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tctttgatgagaggatttgccggctcttctgtcctttttaaaaacactgtgtgcttggca 452

                                                                       
Query: 125 ggaagagccaagaaactaaacctctcctcaaggacattgggggtgagcaggagcaagccg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ggaagagccaagaaactaaacctctcctcaaggacattgggggtgagcaggagcaagccg 392

                                                                       
Query: 185 cttgcttttcttctttcagatctcaaggccgtgcgagcccttttctaaaagaactaggta 244
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 cttacttttcttctttcagatctcaaggccgtgcgagcccttttctaaaagaactaggta 332

                                                                       
Query: 245 ggtggtaggtggcattgactggctgttctgaggaacatggccttgtctgcgtggcttgat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ggtggtaggtggcattgactggctgttctgaggaacatggccttgtctgcgtggcttgat 272

                                                                       
Query: 305 aatatctgttaattcagaggagaaaaacatcttagctgtggcaatggcattgtgccacta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aatatctgttaattcagaggagaaaaacatcttagctgtggcaatggcattgtgccacta 212

                  
Query: 365 aaacaaa 371
           |||||||
Sbjct: 211 aaacaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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