BAC Information

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BAC

Clone NameMSMg01-182P20
Chromosome3 (Build37)
Map Location 49,137,195 - 49,298,196
singlet/doubletdoublet
Overlap gene4932443G14, LOC545519, LOC676568, LOC666247
Upstream gene1700018B24Rik, LOC100039404, EG666230
Downstream geneLOC100039579, LOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469, Slc7a11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182P20.T7 (MSMg01no182_p20.b1)MSMg01-182P20.TJ (MSMg01no182_p20.g1)
ACCAG375719AG375720
length739721
length of high quality
(start - end)		341 (68 - 408)314 (42 - 355)
definitionCHROMAT_FILE: MSMg01no182_p20.b1 PHD_FILE: MSMg01no182_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:53 2005CHROMAT_FILE: MSMg01no182_p20.g1 PHD_FILE: MSMg01no182_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,137,195 - 49,137,535)(49,297,890 - 49,298,196)
sequence
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCATCTACCCTGGCTTAGACTGTGCCTGAGTGGT
AAAACAGAGGAGCCCTCCTCTGCCCTGGGGTAAGAAGAACTGGGTATTTC
TTCAAGTGATTCCCACTACAATGCAAACAAAACGAACAGAAATACTTGAT
TCTCTTCCTAGGAGGAAGAAGAGGTTTAAGATAAAATGCATCATCCCACT
GAAACACCTGTGGGTCTTGGATGATTTTGACCTACTCGGAAAAGGCAAAA
TGTGTACTTGCAAAACCCTTTACCTGTATTGGCCCACCAGAAATTGTATT
GCCAAATTTCGGTAAGACATACAGTTTGGATCTGTATTCACAGGAGGATA
GCTATCGAAACCCCCCCGCAACATAATGTTTCATAATTCACAGATTAAAC
GAATTAACCAGAATGGTTGCAAAATAAGAAATCCATTTTAGTCTGATTGT
ATTCAGGTTCCATACTCCAATTTTCTCCGTCTATGATGACCCCAATTTGC
TTATACTTTCCACAACATACATTTCACATGTAAGCATATGCCCTAATTTT
TTTATCCATAATGTTCATTAGGATTCTAAACGATTCTTGAGGTACAAAGC
ACCTACTTTGTCCTCCAACAATCACGGCGCCCAAATGTATTTTCCTTTGT
CCCCCCCATTTTTTTTTCCCCCTATCCGCCCCTCCTTCG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAAGGATCTGCCTGGGTCTCTCATTCTTCCCATGCATTTCTGTGTCCTG
GGCTTTCTAGACTTTCACACCTCTCCATTCGGCTTCACCTCTATTGTTCG
AGGGATGGCAGTTCCGCTGTTAGGGCTTCTGAAGGATATTTTTTTACCTT
AAGAATTCTATAACATGTGTAATGGAGGTGACAATCTTTTTGAACAACTC
TGAGATTTTGTTTGTATTAAAGCCTTGTCTATCCTCTTATTTTTCTGACT
ATATATTCTAGGGGTAATTTTCTACCTATTCTTTAGATGTTGAAATGTCA
TGTTTTTTTCTCCACCCCCCCCCGCACAATTTTTTTATAGGATTTTCCTA
AAATAAGTCCACCCCCACCTATTAAGGATACCTGTTTTGCTAATCCTCAA
ATGAATACAGTAAATTTTATGTATTCTTTACCAAGGCCAGATTAAATCAC
TCAATATCATCAGGGCTCTATCTATATTTTCTGTTTCTCTTATATCAAGT
CTTTAAGCATTCTCTTTAAGAAGATTCAATTAAGGTAAATTTCATGAGAA
AAACATTACCATTTACACCCCTACATTATCTTTGTACATACAAATCTGTA
CTGTAGTCCATCTTTTCTATGTAGATTTAAATTTGAATAACCCACAATTA
TTGCTTATTTTTAATTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_p20.b1 MSMg01no182_p20.b1 CHROMAT_FILE:
MSMg01no182_p20.b1 PHD_FILE: MSMg01no182_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:53 2005
         (341 letters)



>mm_chr3_49136995_49137735
          Length = 741

 Score =  659 bits (341), Expect = 0.0
 Identities = 341/341 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catctaccctggcttagactgtgcctgagtggtaaaacagaggagccctcctctgccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catctaccctggcttagactgtgcctgagtggtaaaacagaggagccctcctctgccctg 260

                                                                       
Query: 61  gggtaagaagaactgggtatttcttcaagtgattcccactacaatgcaaacaaaacgaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtaagaagaactgggtatttcttcaagtgattcccactacaatgcaaacaaaacgaac 320

                                                                       
Query: 121 agaaatacttgattctcttcctaggaggaagaagaggtttaagataaaatgcatcatccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaatacttgattctcttcctaggaggaagaagaggtttaagataaaatgcatcatccc 380

                                                                       
Query: 181 actgaaacacctgtgggtcttggatgattttgacctactcggaaaaggcaaaatgtgtac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgaaacacctgtgggtcttggatgattttgacctactcggaaaaggcaaaatgtgtac 440

                                                                       
Query: 241 ttgcaaaaccctttacctgtattggcccaccagaaattgtattgccaaatttcggtaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgcaaaaccctttacctgtattggcccaccagaaattgtattgccaaatttcggtaaga 500

                                                    
Query: 301 catacagtttggatctgtattcacaggaggatagctatcga 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catacagtttggatctgtattcacaggaggatagctatcga 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no182_p20.g1 MSMg01no182_p20.g1 CHROMAT_FILE:
MSMg01no182_p20.g1 PHD_FILE: MSMg01no182_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:53 2005
         (314 letters)



>mm_chr3_49297686_49298399
          Length = 714

 Score =  594 bits (307), Expect = e-174
 Identities = 307/307 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaaggatctgcctgggtctctcattcttcccatgcatttctgtgtcctgggctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaattcaaaggatctgcctgggtctctcattcttcccatgcatttctgtgtcctgggctt 452

                                                                       
Query: 65  tctagactttcacacctctccattcggcttcacctctattgttcgagggatggcagttcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tctagactttcacacctctccattcggcttcacctctattgttcgagggatggcagttcc 392

                                                                       
Query: 125 gctgttagggcttctgaaggatatttttttaccttaagaattctataacatgtgtaatgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gctgttagggcttctgaaggatatttttttaccttaagaattctataacatgtgtaatgg 332

                                                                       
Query: 185 aggtgacaatctttttgaacaactctgagattttgtttgtattaaagccttgtctatcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aggtgacaatctttttgaacaactctgagattttgtttgtattaaagccttgtctatcct 272

                                                                       
Query: 245 cttatttttctgactatatattctaggggtaattttctacctattctttagatgttgaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cttatttttctgactatatattctaggggtaattttctacctattctttagatgttgaaa 212

                  
Query: 305 tgtcatg 311
           |||||||
Sbjct: 211 tgtcatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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