BAC Information

Click to search

BAC

Clone NameMSMg01-183A08
Chromosome3 (Build37)
Map Location 94,222,217 - 94,222,884
singlet/doubletsinglet
Overlap geneTdrkh
Upstream geneEG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4
Downstream geneOaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183A08.T7 (MSMg01no183_a08.b1)MSMg01-183A08.TJ (MSMg01no183_a08.g1)
ACCAG375741AG375742
length733746
length of high quality
(start - end)
672 (46 - 717)348 (71 - 418)
definitionCHROMAT_FILE: MSMg01no183_a08.b1 PHD_FILE: MSMg01no183_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:55 2005CHROMAT_FILE: MSMg01no183_a08.g1 PHD_FILE: MSMg01no183_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAATGTCTCATAATGGCAGAAACTATCTGCAGCTGACAAAACCA
TGCCTCTGCTAGAGCATGAGATAACTTATAGTCAGCTGCTTGAAGCAGCC
CCATATCTTCACATCTGGGATTAAAATGAAAGTATATTCTTATATTTATA
TGTATTTAAAAAACACCAGAATTCCAGAATTGTGACTACAGGCTCTCGCT
AAGTTACCCAAATTGGCCTTAGATTCAAACTCATTCTGTGGCACAGTGAA
GCCTTGACTCTGTACTATCACTGCCTCCCAAACAGCTGGAATTATGGGCC
TATCCCACTAGGTCTGCAATGTCCTCTTTAAAAAACATTTTCTTCATTTG
GCTTTCCCAATAGTATAGACTTGATTTTTAACCTCATTTCTGGTTGATAT
ATCATAAGTCTTGCTTAGCAGTTCCTTCTCTGTCTATCTGTCTTTAAACC
TCCAAATATTGGAGTGTCCCAGGAACCCATCTCTTTTCCCAATTCTGTGT
TCTACCCCACTTCCTGGGTGATCTCATCAAGTTTCATTAATGGCTTCAAA
TCCCATCTATGGTCTCATAACTCCCCAGTTTGTAGATCTACTTAGAAATT
TCCTCCTAAACTATAGGTTTGCATCCAGGCATTTTTTTCCTTTTTCTTTT
CTTTCCTTTTCTTTTTTTTTCGTTGCTCTTTTN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTGCCGAATATCTTTGTTTAGCTCTGTACCCCATTTTTTAT
TGGGGTTATTTTGTTTTCTGGACCCCAACTTCTTGAGTTCTTTATATATA
TTGGATATTAGTCCCCTATCGGATTTAGGATTGCTAAACATCTTTTCCCA
ATGTGTTGGTGGTCTTTTTGTCTTACTGACAGTGTCCTTTGCCTTAAGCT
TTGCAATTTTATGAGGTCCCATTTGTCGATTCTTGATCTTACAGCACAGG
CCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGTCCATATCTTTGAGG
CTCTTCCCCACTTTCTCCTCTGTAAGTTTCAGTGTCTCTGGTTTTATGTG
GAGTTCCTTCACACACCCACACTTGAGTTTTGAACAAGGAGATTAGAATG
GATCAATTTGCATTCTTTTATATGATAACTGCCAGTTGAGTCAGCACCAT
TAGCTGAACATGCTGTCTTTTTTCCACTGGACGATCTTAGCCTTCCTCGT
CCACTATCCAATGACCACAGGTATGTGGGACCTATTTTTGGGTCTTTAAG
TTTATTTATTGGTTTATTTTGTCTGCCATTGGCATACCTCCTATGTTTAT
TCTTTCCTTCCCCCCGCCTTTTTTTTTCCCCTCTTATTTCCACCCTTTGC
ATTTTCCTCCCCTCACAGTGTTTTTCCATTCTATATTACACCCGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_a08.b1 MSMg01no183_a08.b1 CHROMAT_FILE:
MSMg01no183_a08.b1 PHD_FILE: MSMg01no183_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:55 2005
         (672 letters)



>mm_chr3_94222168_94223239
          Length = 1072

 Score = 1253 bits (648), Expect = 0.0
 Identities = 663/668 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaatgtctcataatggcagaaactatctgcagctgacaaaaccatgcctctgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gaattccaaatgtctcataatggcagaaactatctgcagctgacaaaaccatgcctctgc 658

                                                                       
Query: 65  tagagcatgagataacttatagtcagctgcttgaagcagccccatatcttcacatctggg 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tagagcatgagataaattatagtcagctgcttgaagcagccccatatcttcacatctggg 598

                                                                       
Query: 125 attaaaatgaaagtatattcttatatttatatgtatttaaaaaacaccagaattccagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 attaaaatgaaagtatattcttatatttatatgtatttaaaaaacaccagaattccagaa 538

                                                                       
Query: 185 ttgtgactacaggctctcgctaagttacccaaattggccttagattcaaactcattctgt 244
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ttgtgactacaggctctctctaagttacccaaattggccttagattcaaactcattctgt 478

                                                                       
Query: 245 ggcacagtgaagccttgactctgtactatcactgcctcccaaacagctggaattatgggc 304
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ggcccagtgaagccttgactctgtactatcactgcctcccaaacagctggaattatgggc 418

                                                                       
Query: 305 ctatcccactaggtctgcaatgtcctctttaaaaaacattttcttcatttggctttccca 364
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ctatcccactaggcctgcaatgtcctctttaaaaaacattttcttcatttggctttccca 358

                                                                       
Query: 365 atagtatagacttgatttttaacctcatttctggttgatatatcataagtcttgcttagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 atagtatagacttgatttttaacctcatttctggttgatatatcataagtcttgcttagc 298

                                                                       
Query: 425 agttccttctctgtctatctgtctttaaacctccaaatattggagtgtcccaggaaccca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 agttccttctctgtctatctgtctttaaacctccaaatattggagtgtcccaggaaccca 238

                                                                       
Query: 485 tctcttttcccaattctgtgttctaccccacttcctgggtgatctcatcaagtttcatta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 tctcttttcccaattctgtgttctaccccacttcctgggtgatctcatcaagtttcatta 178

                                                                       
Query: 545 atggcttcaaatcccatctatggtctcataactccccagtttgtagatctacttagaaat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 atggcttcaaatcccatctatggtctcataactccccagtttgtagatctacttagaaat 118

                                                                       
Query: 605 ttcctcctaaactataggtttgcatccaggcatttttttcctttttcttttctttccttt 664
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 117 ttcctcctaaactataggtttgcatccagtcatttttttcctttttcttttctttccttt 58

                   
Query: 665 tctttttt 672
           ||||||||
Sbjct: 57  tctttttt 50


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)