BAC Information

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BAC

Clone NameMSMg01-183G13
Chromosome3 (Build37)
Map Location 132,208,190 - 132,208,625
singlet/doubletsinglet
Overlap genenone
Upstream genePapss1, Olfr375-ps1, Dkk2, LOC100039018
Downstream geneEG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183G13.T7 (MSMg01no183_g13.b1)MSMg01-183G13.TJ (MSMg01no183_g13.g1)
ACCAG376010AG376011
length735710
length of high quality
(start - end)
274 (42 - 315)436 (75 - 510)
definitionCHROMAT_FILE: MSMg01no183_g13.b1 PHD_FILE: MSMg01no183_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:25 2005CHROMAT_FILE: MSMg01no183_g13.g1 PHD_FILE: MSMg01no183_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTCAGCTCTGAGCCCCATTTTTTGATTTTCTGGAGTCCACCTTCT
TGAGTTCTTTATATATATTCGATATTAGTCCCCTATTCGATTTGGGATAG
GTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACGGT
GTTTTTTGCTTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTATCGA
TTCTCGATCTTACAGTACAAGCCATTGCTGTTCTAGATATCCTGAAACTT
ACCACATAAGCCATTCTTTTTCACAAGAGATCTGCCTGCTTCTGCCTCCC
AAGTGTTTTTTTTTCCCCCCCCCCCCCCCCTGACCTATATTCATTCTCTA
TTTTTTTTTTGCCATCCCCCAAAAATATTTTTCCCCTTTCCTCCTGATCA
TTTTCTCTCACGCCGCACTTCTCTTTTCTTCTATCATCCCTTTTGTCTCT
CCTTCTCTGTTCTTTCCCAGCACTATATCCCCTTATCTATTTTTGCTCCT
CTTATTATTTTGTCCGTCCCTGCTATTCCTCACTTTACTTCCTTTTTATC
CCCATCTTTTTTTCTTCCCCCCCTCCTCTCCTATCTTATTCTATTACCTT
TTACTATTTTTTTTTCTTCCCTTTTTTTCCTCCTCTTTTATTTTCTCCCC
CTCTCCTATCTCCTTCTTTCCCCTTCTTTTTTTTT
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTAAAAAGAGCCTTGCCACCTAAGA
AATGTTAATCTCCCCTCTTGCCCCATGCCAAGAGAGGACCATAAACTAGA
TGGGAGATCTGGCTAGAAAGAAGAAAAACAGTGTTGTCCCTGTTAAATAA
TAATCAGAATAAAGACATACAAATGATATCTGGGATTAGCCTACTCCAAA
GGAAACACATTTACCAAGTGAGATCATTTGAGTTACCACAGAACACTTGA
TCAGTTTTGCTTATTGATCTGAAATGTCCCTAGGGACCTGTGTGTTAAAG
ATTTGGTCCCCAGCCTGTGGCTTTGCTGAGAGGTAGGTGCAACAACATCC
CAGCTCTTCATGCCCCCACCCAAGGCAAGACTGGAGGATAGAGTGGGACC
CAAAATCCTTCATCTTTTTCCTGACTGTGAGATAAGAGTTCTTTCTCTGA
TGTTTGCTTCTATCATACAGAACTGCCTTGTCATAGGCAAAGAGTAACCT
GGTCACACAATCACAGGTGAGAATCTGTGATCTGCGTTTGAATCTGAATG
CTCTCTCCCTCCCAATTTATTTCTCCTGTGATTTTCTGGCTTTGCTACTT
TCTTATACTATCTCTTTTTATTTTACCTTCCCTCTCACTTGTTTATTTAT
TTTTAATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_g13.g1 MSMg01no183_g13.g1 CHROMAT_FILE:
MSMg01no183_g13.g1 PHD_FILE: MSMg01no183_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:25 2005
         (436 letters)



>mm_chr3_132207990_132208825
          Length = 836

 Score =  712 bits (368), Expect = 0.0
 Identities = 419/440 (95%), Gaps = 8/440 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaaaaagagccttgccacctaagaaatgttaatctcccctcttgccccatgccaagag 60
           ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 actaaaaagagccttgccatctaagaaatgttaatctcccctcctgccccatgccaagag 260

                                                                       
Query: 61  aggaccataaactagatgggagatctggctagaaagaagaaaaacagtgttgtccctgtt 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 aggaccataaactagatgggagatctagctagaaagaagaaaaacagtgttgtccctgtt 320

                                                                       
Query: 121 aaataataatcagaataaagacatacaaatgatatctgggattagcctactccaaaggaa 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 aaataataatcagaataaagacatacaaatgacatctgggattagcctactccaaaggaa 380

                                                                       
Query: 181 acacatttaccaagtgagatcatttgagttaccacagaacacttgatcagttttgcttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 acacatttaccaagtgagatcatttgagttaccacagaacacttgatcaattttgcttat 440

                                                                       
Query: 241 tgatctgaaatgtccctagggacctgtgtgttaaagatttggtccccagcctgtggcttt 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 cgatctgaaatgtccctagggacctgtgtgttaaagatttggtccccagcctgtggctct 500

                                                                       
Query: 301 gctgagaggtaggtgcaacaacatcccagctcttcatgccccc----acccaaggcaaga 356
           ||||||||||||||||||||||||||||| |||||||||  ||    |    |||| |||
Sbjct: 501 gctgagaggtaggtgcaacaacatcccaggtcttcatgctgccgtgga----aggcgaga 556

                                                                       
Query: 357 ctggaggatagagtgggacccaaaatccttcatctttttcctgactgtgagataagagtt 416
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 557 ctggaggatagagtgggacccaaaatccttcatctttttcctgcctgtgagataagagtt 616

                               
Query: 417 ctttctctgatgtttgcttc 436
           ||||||||||||| ||||||
Sbjct: 617 ctttctctgatgtctgcttc 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)