BAC Information

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BAC

Clone NameMSMg01-183H22
Chromosome3 (Build37)
Map Location 7,761,893 - 7,762,486
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667801, Pkia, LOC667807, 3110050N22Rik, Il7
Downstream geneLOC620822, LOC633072, LOC545500, LOC620966, Stmn2, Hey1, LOC100039504
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183H22.T7 (MSMg01no183_h22.b1)MSMg01-183H22.TJ (MSMg01no183_h22.g1)
ACCAG376066AG376067
length716758
length of high quality
(start - end)
368 (45 - 412)591 (73 - 663)
definitionCHROMAT_FILE: MSMg01no183_h22.b1 PHD_FILE: MSMg01no183_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:31 2005CHROMAT_FILE: MSMg01no183_h22.g1 PHD_FILE: MSMg01no183_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACACCAGACGTGTCTGGAATGGCTGAGAAGTACCTAAGGAAATGAA
TGTTTAAAGTCCTCTGTGATCAGGGAAATACAAATCATAATGACTCCGAA
ATTCTACCTTTCACAAATCAGAATGGCTAATATCAAAACCTCAGGTCACA
GCACATGCTGGTGAGAAGGTGGAGAAAGAGGAACACTCCTCCATTGCTGG
TGGGATAGCAAACTGGTAAAACTGCTCTGGAAATCAGTATGGCAGTTCCT
CAGAAAATTAGACATAGTACTACCTGAGGATCCAGCTATATGGCTCTTGG
GAATATACCCAAGTGATTCCCCACCATGTTCCAAGGGCTCATGTTCCACT
ATGTTCATAGTGCCCCCGCTTGTGATAGACAATAGCAGGAAACAACCTAG
ATGTCCCATGACAGAAGAATGGATACAGAAAATGTTCATTTACACAGTGG
AATACTACTCAGCTATTAAGAAAGAGGATATCCTGCATTTTGCAGGCAAA
TGTATAGAACTAGAAAATATCATCCTAAGTACGGTAACTCAGATCCAAAA
TGATATGCATGGTATGTACTCACTAATAAGTGGATATTATCAAAGAAATG
TACAGAATATTCAAGATACAGTCTACAGAACTCAAGAGGTCAACAAGCTC
ATGGGACCAAGTTAGG
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTCTGTAAATGAATGTGATGCGATATT
CTTTGCATAAAGGCTCTTATGTGAAGGACCCCATGAACATGGAGGATAGT
ACTACTGAGTTAACACCAATAGTTTCACAGAGTAGATATTTATATAGTCT
GATTTTCAGTGACAATGGACTCATTATCGTCTTGTCTTCTTGGGACAACC
TCTGTTCCTCATTGTTGCTGGTTGTTAACTACTATGCTGTGGTTACATAC
CCTTTAGTGCGTTATCAAACGCTTTATTCTGAAATCTGCGCCAACAGAGT
TAACGTGGTCCATTTATAAACTGAGATTCTTGTGTAAATTCTTTTTACTC
CCCCCCCAATAGAACATTTTTAACTAAAGACAGCAAATTGTTACAATAAA
CAAGGGAACACTCTCTAAACACATTGTCATATCAAAAAATAGAATTATTA
AGTTTCTGGGTTTTTTAACATTAAAATAGTCTTTTTATGAAATATACTCT
ATGTTTTTTTCTTCCCAACCCACCCATATCCTCCTCATTTTCTCATCCTT
CCATATCTACACCTCTTTTTTCTGTCTTTCATTANAACATAATATAAGCA
GGCAACTGAAAAGATGATAATAGTAAGATAAAATATTAAACACAGAAATA
AGAATACGGACAAACACACCATCTAACTAGAAAGGAACTAAGGTATGAGT
ACGACACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_h22.g1 MSMg01no183_h22.g1 CHROMAT_FILE:
MSMg01no183_h22.g1 PHD_FILE: MSMg01no183_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:32 2005
         (591 letters)



>mm_chr3_7761693_7762687
          Length = 995

 Score =  992 bits (513), Expect = 0.0
 Identities = 572/594 (96%), Gaps = 4/594 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctgtaaatgaatgtgatgcgatattctttgcataaaggctcttatgtgaaggacccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctgtaaatgaatgtgatgcgatattctttgcataaaggctcttatgtgaaggacccc 260

                                                                       
Query: 61  atgaacatggaggatagtactactgagttaacaccaatagtttcacagagtagatattta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 atgaacatggaggatagtactactgagttaacaccaatagtttcacagagtagacattta 320

                                                                       
Query: 121 tatagtctgattttcagtgacaatggactcattatcgtcttgtcttcttgggacaacctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatagtctgattttcagtgacaatggactcattatcgtcttgtcttcttgggacaacctc 380

                                                                       
Query: 181 tgttcctcattgttgctggttgttaactactatgctgtggttacataccctttagtgcgt 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 tgttcctcattgttgctggttgttaactactatgctgtagttacataccctttagtgcgt 440

                                                                       
Query: 241 tatcaaacgctttattctgaaatctgcgccaacagagttaacgtggtccatttataaact 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 tatcaaacgctttattctgaaatctgagccaacagagttaacgtggtccatttataaact 500

                                                                       
Query: 301 gagattcttgtgtaaattctttttactccccccccaatagaacatttttaactaaagaca 360
           |||||||||||||||||||||||||||| | ||| ||||||| |||||||||||||||||
Sbjct: 501 gagattcttgtgtaaattctttttactctctcccaaatagaatatttttaactaaagaca 560

                                                                       
Query: 361 gcaaattgttacaataaacaagggaacactctctaaacacattgtcatatcaaaaaatag 420
           ||||||||||||||||||| |||| |||||||||| |||||| |||||||||||||| ||
Sbjct: 561 gcaaattgttacaataaactaggggacactctctagacacatggtcatatcaaaaaagag 620

                                                                       
Query: 421 aattattaagtttctgggttttttaacattaaaatagtctttttatgaaatatactct-- 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 621 aattattaagtttctgggttttttaacattaaaatagtctttttatgaaatatactctga 680

                                                                       
Query: 479 --atgtttttttcttcccaacccacccatatcctcctcattttctcatccttccatatct 536
             ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtatgttttcttcttcccaacccacccatatcctcctcattttctcatccttccatatct 740

                                                                 
Query: 537 acacctcttttttctgtctttcattanaacataatataagcaggcaactgaaaa 590
           ||||||||||||||| ||||| |||| ||||||||| ||| |||||||||||||
Sbjct: 741 acacctcttttttctctcttttattagaacataataaaaggaggcaactgaaaa 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 995
Length adjustment: 10
Effective length of query: 581
Effective length of database: 985
Effective search space:   572285
Effective search space used:   572285
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)