NNNGGTTTTTNNNNNTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCGCGGAATTCTACAATTGATAACTGAAAAATCTT
CCTGTATTAGATCCAATATTTTTATGTATGTAAGCCTCACAAAGCTTCCC
ACATGTCTTCATACTTCCTCAATTGAATATTTCTCTTCAATCCAGTGTTC
TTATGAAAATTAGTTGTGACATACTCACTTTCATTTCCCAATTGTTTGGA
TTACATTACGTCTCCTTCTCTGCCAAGTCTCCCCATTATTCAACATCCAA
TTCAAATTTCATTTTTTCTCATAAATTCCCATTGAAGCAAACCAAATATT
TGCCTTCACATACTCAACTATATTTTGTTTACCCTCCCCCCCCACAAGTT
ACTTTTCAAATGCTCTCTCTCTCTCTCTCTCTCACAAAATATCTCTCTCT
CTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTCTGTGTATGT
TTCTTAAGACAATAAGATCCCTAAAAAAATAAATAAATCTTATATTTCCT
GCTTTCTGTGGTAAGTAGAACATTGAACAGATTACTGAAGCTCACAACAT
CTCACTACCATGTGCTTAATAAACATAAGGCCTATGAATTTCATCCCCTC
CTGCATATGTTCTACCGCATCAAAACCCAGTCTAAAGTTATTTTGTTACA
AT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCTAGCAGCAATTCAGTTGTTA
CACATGTGAGTTTGAGTTGAGTACTAAGTATGGGAGAGAAGGCTGGACCA
GAAGTCCAGTATATGGACCCACCTAACCATGGTTTTGAGTGGCTCAGCAC
AGGAACTGCTTTTAGTTAGTGCTCAAGATAATTTACTGTCAGTGTTTCTT
CAGGTTGCCTTTTGGTTTTTTTTTTTAATCCGTAATATTTTTATTTACTT
ATTTGTATGTGTGCACCTGCTTGCCTGTATGTGCGCCATTCATGGGCAGG
CAACTGTTTTTTTTTCACCCGGCCCCCCCCTGGAGTTACAGGCAGCTGGG
AGCCTCCCGCTGCCCCCTGAAAAAAGAACTCGGGTCCTCTGAGAGAGCAG
CAAACATTCTTAACTGTGAGATGTTTCTCCAGTTCCTACTTGATTTTCTC
ATGTGTTTGTTCATTTGATACAGGCACTCATGTTGGTACCGGCTGTTTTT
GAACTCGATATGTAACCGAGTTTCTACCCTGTATTCTTGATCTGCCCCTA
CTTGCTAATCCTTGCCGTATTGACGACTTTTGATGTCTATTTCTCTCCCC
CTCATCTTCCCCCCCTTATATATCACAATGACTCTATTACACAGAACCCC
GTTTATATTTCCCCCCN

Query= MSMg01no184_g14.b1 MSMg01no184_g14.b1 CHROMAT_FILE:
MSMg01no184_g14.b1 PHD_FILE: MSMg01no184_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:46 2005
         (304 letters)



>mm_chr3_82025690_82026393
          Length = 704

 Score =  580 bits (300), Expect = e-170
 Identities = 300/300 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctacaattgataactgaaaaatcttcctgtattagatccaatatttttatgtatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacaattgataactgaaaaatcttcctgtattagatccaatatttttatgtatg 264

                                                                       
Query: 65  taagcctcacaaagcttcccacatgtcttcatacttcctcaattgaatatttctcttcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taagcctcacaaagcttcccacatgtcttcatacttcctcaattgaatatttctcttcaa 324

                                                                       
Query: 125 tccagtgttcttatgaaaattagttgtgacatactcactttcatttcccaattgtttgga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tccagtgttcttatgaaaattagttgtgacatactcactttcatttcccaattgtttgga 384

                                                                       
Query: 185 ttacattacgtctccttctctgccaagtctccccattattcaacatccaattcaaatttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttacattacgtctccttctctgccaagtctccccattattcaacatccaattcaaatttc 444

                                                                       
Query: 245 attttttctcataaattcccattgaagcaaaccaaatatttgccttcacatactcaacta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attttttctcataaattcccattgaagcaaaccaaatatttgccttcacatactcaacta 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no184_g14.g1 MSMg01no184_g14.g1 CHROMAT_FILE:
MSMg01no184_g14.g1 PHD_FILE: MSMg01no184_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:46 2005
         (279 letters)



>mm_chr3_82160199_82160877
          Length = 679

 Score =  352 bits (182), Expect = e-101
 Identities = 188/190 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ctagcagcaattcagttgttacacatgtgagtttgagttgagtactaagtatgggagaga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ctagcagcaattcagttgttacacatgtgagtttgagttgagtactaagtatgggagaga 334

                                                                       
Query: 64  aggctggaccagaagtccagtatatggacccacctaaccatggttttgagtggctcagca 123
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aggctggacctgaagtccagtatatggacccacctaaccatggttttgagtggctcagca 274

                                                                       
Query: 124 caggaactgcttttagttagtgctcaagataatttactgtcagtgtttcttcaggttgcc 183
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 273 caggaactgcttttagttagtgctcaagataatttactgtcagtgattcttcaggttgcc 214

                     
Query: 184 ttttggtttt 193
           ||||||||||
Sbjct: 213 ttttggtttt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)