BAC Information

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BAC

Clone NameMSMg01-184L16
Chromosome3 (Build37)
Map Location 130,495,250 - 130,495,553
singlet/doubletsinglet
Overlap genenone
Upstream geneGm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1, Agxt2l1, 2310008M10Rik, Rpl34
Downstream geneLOC546811, LOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184L16.T7 (MSMg01no184_l16.b1)MSMg01-184L16.TJ (MSMg01no184_l16.g1)
ACCAG376928AG376929
length7421,117
length of high quality
(start - end)
309 (57 - 365)---
definitionCHROMAT_FILE: MSMg01no184_l16.b1 PHD_FILE: MSMg01no184_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:13 2005CHROMAT_FILE: MSMg01no184_l16.g1 PHD_FILE: MSMg01no184_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGCCCACATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCAAAGAACACGCCACAACAGAATCCAGATACCTGT
TAGGATAAACCCAAATTCTATTTCCATTATTACTTATTACTTAAGGCCCT
TTGTGGGCCTGCAGTGTTATAATGATGATAATATTAATTGGTAATCGGAA
AGAGCGTGGTGGAGTCTTTCCTCTGAGAAGCAGAGTTGCGGGGAGAAAAC
ATCAGAGGCTCTTTATGCCACGTACCATTGCAGGTGGGAAAGAAAAATAA
TAAATTAAGGAGGGATTATAGTAATTTACTGTCTACTGTTTCTTTCTTTA
ACCACTAATCCCAGTCTTCATAGTTTCCCCCCCCCCGCATGGATGCAGCT
CAGTGTGTAGAGTACCTGCCTACCACGCACGAAAAACTGAATTCATTCTT
TACATCAAACCAGATTTGGAGGCACACACCTATAACCCCAGAAACTAGGA
GGTGTGAGCAGCAAGATCAGGAATTCAGTGGCATCCTCTCCCACAGTGTG
AGTACTGGAATACAAGTTGAACACCCCCCCTCAAAAAAGATAAGAACCAG
GTGGTGGTGGTCCACATCTTTGATGCCCACACTTGGTAGCCAGAGGCAAG
CAGATCTCTCTGTGACTTTGAGGCCCCCATGATTTATACTGCTAGTTTCT
GGATCCCCAAGGTTACTCTTATAAACCCTGTCTTATAATATT
TGCCTCTGAGATTTTTGTGCCGTGCGTCTCTGTTTTGTTTCTTTCGCGGG
GTTTGATTTGGGTGTAATTTTTTTAATATATATTTGTTTCTTTTTCCGCG
CGCCGTGTTGTGTTTTGTGTTTGTGCGGGNCTTCGTGTGNCTGATGTTGT
GTGTTGTNTTTGNTCTCCNCTCGTTTCTCGCCCGATAAAATTTTTTTCCC
CTCTTTATAGNTGGGGGGAGGGGGGTTTTTATAGAGGGTTTCCCCCCCTT
GTTTTCGGGGGCCCGGCCCCTGTGTCCCGGTTCGAAACCTTTTTTAGGGG
TTGTACCACTTATTTAGGAAGGGGATTCCGGGCGTGNATTTTTTCTTTCC
CCTTGGAGGGGAATTTACCCAAAATTTGGCCTTTGGAGATAAAGCCACCC
TTTGAAAAAAAATTTTGGTTTTCCAACCCTTCTCCTTTTATATTTCCCTT
TCCGGGGGGGAATTATGGGGCAAATCTTCCCTAAAACACCCCCCCCGGGG
GGAATTTTTTCCCCTTCTCTCCCCCCCCCCCTGTTTTCTAAATATTGTGG
GGTTTTATAATTTTCTCAAAATATATTTTTCTCGGGGTTGCTCACCCCCC
TAATATTTCTTTCTTGCTCCCAAAAATTTTTTTTTTGTTTGTACAAATAA
TAATAAAGGAAGAAAACCCCCTCCCCCTCCCTCCCCTCTTTTGTTTGTGT
TTGTGGGGCGGTATTTTATTTCTTCTATACATTTTTTTTTTTCTTCTCAA
CACCCTCCCCCTCCTCTTTGCGTGGGAAAATATATATATTTGTGGTTGGC
GAGGGGGGTCCCTCCCCCCTCCTCAATATTATTTTTTTGTTTTTTTTATT
TATATTTTTTTCTCCCTTCTTGGCGGTGGGAGGGTTGTTCCTACACAAAA
ACACACCCCCCCGGGGGGGTTTTTAAANNATAAGAGTTTTTGTTCCCCCA
NAGGAGGGGACCGAAAAAAAAGAAGCCCTTCTCTTTTTTGTTTTTTTAAA
TTTCTTTTATTTTTATATTTTTCTTTATTTCTCTCCCCCCCCCCCCGGNG
GCGCCCATATATTAAATAAAAATAAAATTATAATTCCGCTGGGTGGGCGG
GGCTGTGTGATGTTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_l16.b1 MSMg01no184_l16.b1 CHROMAT_FILE:
MSMg01no184_l16.b1 PHD_FILE: MSMg01no184_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:13 2005
         (309 letters)



>mm_chr3_130495046_130495754
          Length = 709

 Score =  572 bits (296), Expect = e-168
 Identities = 302/304 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaagaacacgccacaacagaatccagatacctgttaggataaacccaaattcta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gaattcaaagaacacgccacaacagaatccagatacctgttaggataaacccaaattcta 449

                                                                       
Query: 65  tttccattattacttattacttaaggccctttgtgggcctgcagtgttataatgatgata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tttccattattacttattacttaaggccctttgtgggcctgcagtgttataatgatgata 389

                                                                       
Query: 125 atattaattggtaatcggaaagagcgtggtggagtctttcctctgagaagcagagttgcg 184
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 388 atattaattggtaatcggaaagggcgtggtggagtctttcctctgagaagcagagttgcg 329

                                                                       
Query: 185 gggagaaaacatcagaggctctttatgccacgtaccattgcaggtgggaaagaaaaataa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gggagaaaacatcagaggctctttatgccacgtaccattgcaggtgggaaagaaaaataa 269

                                                                       
Query: 245 taaattaaggagggattatagtaatttactgtctactgtttctttctttaaccactaatc 304
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 taaattaaggaggggttatagtaatttactgtctactgtttctttctttaaccactaatc 209

               
Query: 305 ccag 308
           ||||
Sbjct: 208 ccag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)