BAC Information

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BAC

Clone NameMSMg01-185A20
Chromosome3 (Build37)
Map Location 152,126,570 - 152,126,873
singlet/doubletsinglet
Overlap geneAk5
Upstream geneEltd1, Ifi44, H28, Ptgfr, LOC100040741, LOC100040597, LOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3
Downstream geneLOC100040705, Pigk, Rpl29-ps1, St6galnac5, LOC100040750, St6galnac3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185A20.T7 (MSMg01no185_a20.b1)MSMg01-185A20.TJ (MSMg01no185_a20.g1)
ACCAG377158AG377159
length691748
length of high quality
(start - end)
310 (46 - 355)291 (89 - 379)
definitionCHROMAT_FILE: MSMg01no185_a20.b1 PHD_FILE: MSMg01no185_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:39 2005CHROMAT_FILE: MSMg01no185_a20.g1 PHD_FILE: MSMg01no185_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCCGTAACACCTTTCGCTTTGTCCCCATCCCCACCCATTCTCGC
TGGCTGTGTCCTTCCCAGCTCATCTCCTGAGAGGTTCTGGAAATCATGCA
TGGTACACTTCGGACTGTCCACCTTTCTCTCGTGCTGGCAATTGTCCCCA
CTCTGGCACTTGTCTTTGGATGAAAAGAGCAGTGTGGGCTCTGCCTGTTC
CAGCTCTGCCTCAGGGCCGGCTGCAGTCTGATCCACCACACAGGGACATC
ATATCCCTATTTCTCCATCACAGCTTCCTCCTTCTCATGGGCTTATTTGT
TCTTTTCTGATGCCCCCCCGCCCACCATGGGGACAGGCTTGGACACCTCA
TCTGGTACTGGCTGCTTAATCAATTCCCATCCATGAGAGGGCCCGGAGCC
CTAGTGGGACTTTTAAATGTCCTATGGGATACAAGGTACCAAGCCAGTGG
AACCTGACAGAAATATTTCAAAATGGCATTGATCAGCTTCTCTTAGAGAG
CAAAGCCCAGACAATCAGTCCCACCCACTCTGGAACACTAGCTATTTTGA
ACAGTGTCATAGATGCTAACAACTCTGGTCAAGTCTACAAGCCGCTCCTC
TCCACATGGCAGTGTGGCTCAGCAATTATGTACTTTACCAA
CAAAACNNNNCCTCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGATACTGCT
AGCTGTTTTCCATATGCAGTAATGTTTTTAAAAATCCTATTAAAATAAAA
TCAAGGGGCTGGAGAGAGGGCTCTTTGGTTAAGAGCATGTACTAATCTTT
TAGAGTACAGGTGATTCACAGCTGTCTGTAACTGTGTATAACATCAGGGG
GTGGTACCTCTGAGCTCTTCAGGCTCCTGGACTCATGTACACACACCAAG
ACAGACACACCATCTGTCCTTAGGGTCTCTATAGCCCTGGCTATCTTGGA
ACGTGTGTCATCTGTGCAATACTGGTTGTGTCACACTCCACACCACCTAA
AAGGATTCCTCACTGGGAATCTTCCCAGGTGATCCTAGGACCAAGTTGAT
AAAACCAACCTCACATATGTATTCAAAGACATTTGAGGAGCTACTCGGAG
TCTTTATTCCTTTTCTTTTCCCATTCATGCCTCCACCCTAGAAACTTTAT
TTTTAATATGGAAAAATAGTTAACTACCTTACTCGAGTCACCACCCCCTC
CATCACTGAAAGGGACAGCAGTCAGATTACATCTTTTATTTGCCACGTGT
TTATTTTTAAAATCTGCTTTTAAAATGCAGTCTTCATGAGTGGCTGTGAG
GGGGAATGGGGTGACGACTGCACAGGTGTCTGTTACCTGTATTAGGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_a20.b1 MSMg01no185_a20.b1 CHROMAT_FILE:
MSMg01no185_a20.b1 PHD_FILE: MSMg01no185_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:39 2005
         (310 letters)



>mm_chr3_152126367_152127076
          Length = 710

 Score =  557 bits (288), Expect = e-163
 Identities = 300/304 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacccgtaacacctttcgctttgtccccatccccacccattctcgctggctgtg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggaattcacccgtaacacctttcgctttgtccccatccccacccattctcgctggctgtg 448

                                                                       
Query: 64  tccttcccagctcatctcctgagaggttctggaaatcatgcatggtacacttcggactgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tccttcccagctcatctcctgagaggttctggaaatcatgcatggtacacttcggactgt 388

                                                                       
Query: 124 ccacctttctctcgtgctggcaattgtccccactctggcacttgtctttggatgaaaaga 183
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 387 ccacctttctctcgtgctggcaattgtccccactctggcactcgtctttggatgaaaaga 328

                                                                       
Query: 184 gcagtgtgggctctgcctgttccagctctgcctcagggccggctgcagtctgatccacca 243
           |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 327 gcagtgtgggatctgcctgttccagccctgcctcagggccggctgcagtctgatccacca 268

                                                                       
Query: 244 cacagggacatcatatccctatttctccatcacagcttcctccttctcatgggcttattt 303
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cacagggacagcatatccctatttctccatcacagcttcctccttctcatgggcttattt 208

               
Query: 304 gttc 307
           ||||
Sbjct: 207 gttc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)