Query= MSMg01no185_e19.b1 MSMg01no185_e19.b1 CHROMAT_FILE:
MSMg01no185_e19.b1 PHD_FILE: MSMg01no185_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:57 2005
(653 letters)
>mm_chr3_126359127_126360179
Length = 1053
Score = 1183 bits (612), Expect = 0.0
Identities = 639/648 (98%)
Strand = Plus / Plus
Query: 5 gaattcttgagctttcgattcttataaagcaaatgccagttaaaaggtttctgaggctga 64
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgagctttcgattctcataaagcaaatgccagttaaaaggtttctgaggctga 264
Query: 65 aaggtttccctgttcagctctaatagaaactcagcacttactgaagcctactgtttgtca 124
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaggtttccttgttcagctctaatagaaactcagcacttactgaagcctactgtttgtca 324
Query: 125 ctgcctccatttggattccgtgttaattccaaaagtgtggacatgacccttggtccagtc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgcctccatttggattccgtgttaattccaaaagtgtggacatgacccttggtccagtc 384
Query: 185 cagtcattattgctctataaagggctatttccctttgcaccccaataggttagaccttga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagtcattattgctctataaagggctatttccctttgcaccccaataggttagaccttga 444
Query: 245 attggatttgattgatgacctgacttgcttttaagatgttttgtgattataggacacaca 304
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 attggatttgattgatgacctgacttgcctttaagatgttttgtgattataggacacaca 504
Query: 305 gaatactttgtcctgccagtcaccatttgtcaggtagaaaacttccagccaaccatgtta 364
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaatacagtgtcctgccagtcagtatttgtcaggtagaaaacttccagccaaccatgtta 564
Query: 365 catgcacattgtactacttagataactgctcctgattgtaacttaggagtgatttgtaac 424
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catggacattgtactacttagataactgctcctgattgtaacttaggagtgatttgtaac 624
Query: 425 agaatgtcgtggggcttaaaacatggtgattcaatgcttctatgtatatcttcttccact 484
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 625 agaatgtcgtggggcttaaaacatggtgatccaatgcttctatgtatatcttcttccact 684
Query: 485 tcagtgatacacggctgagaaacctaacgtgagggctggtgaaattatttccctcccgtt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcagtgatacacggctgagaaacctaacgtgagggctggtgaaattatttccctcccgtt 744
Query: 545 ggattcagggagacaggaaggatgagttccatgggctttcatttggaatgagcaaaactg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggattcagggagacaggaaggatgagttccatgggctttcatttggaatgagcaaaactg 804
Query: 605 gtacaaatgaagaaaatgagtgtgctcttggctaactttctaatgaac 652
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gtacaaatgaagaaaatgagtgtgctcttggctaactttctaatgaac 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no185_e19.g1 MSMg01no185_e19.g1 CHROMAT_FILE:
MSMg01no185_e19.g1 PHD_FILE: MSMg01no185_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:57 2005
(577 letters)
>mm_chr3_126486618_126487594
Length = 977
Score = 1013 bits (524), Expect = 0.0
Identities = 566/584 (96%), Gaps = 7/584 (1%)
Strand = Plus / Minus
Query: 1 cagtggtgtgagtgtacaaccctataaggctcgccatacctgcgttctcggtattctaaa 60
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 951 cagtggtgtgagtgtacaaccccataaggctcgccatacctgcgttctcagtattctaaa 892
Query: 61 agaaagcactggtgtcaccagaacactactggaaatgtcaacttgcccactccagcccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 agaaagcactggtgtcaccagaacactactggaaatgtcaacttgcccactccagcccta 832
Query: 121 atcaagaccatgagctataccttacctccctctctaggaatctttggggagactaaggtt 180
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 831 atcaaaaccatgagctatactttacctccctctctaggaatctttggggagactaaggtt 772
Query: 181 tgaaaggttctgagttcaagtctaacaacactgcttactatagaatatttgtgcccttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tgaaaggttctgagttcaagtctaacaacactgcttactatagaatatttgtgcccttcc 712
Query: 241 cccacttgacatggtgacatcattaacctcactgtgatgaaattagaagtgaacccttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 711 cccacttgacatggtgacatcattaacctcactgtgatgaaattagaagtgaagccttca 652
Query: 301 gtggtaa-------tcagggctcggattatgatgccctaggataaagactcttcaccacg 353
||||||| ||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 651 gtggtaaaaaatgttcagggctcagattatgatgccctcggataaagactcttcaccacg 592
Query: 354 ggtgaactcaaaacagaaaataggcatctatgtgtccagacagagtatacatctctggac 413
|||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct: 591 ggtgaactcaaaacagaagacaggcatctatgtgtccagacagagtatacgtctctggac 532
Query: 414 gtgtccagatgtatactctgtctggagagtaaatctataggtaccatgactttaggcttt 473
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 531 gtgtccagatgtatactctgtctggacagtaaatctataggtaccatgactttaggcttt 472
Query: 474 ccagcttctaggatcattaaaaatacttttcagttttttaagccagtcagtctttggtat 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ccagcttctaggatcattaaaaatacttttcagttttttaagccagtcagtctttggtat 412
Query: 534 tttgttattgcagcccaaattgatgaagacactggtccattaca 577
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tttgttattgcagcccaaattgatgaagacactggtccattaca 368
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
