BAC Information

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BAC

Clone NameMSMg01-185P24
Chromosome3 (Build37)
Map Location 77,303,323 - 77,303,608
singlet/doubletsinglet
Overlap genenone
Upstream geneFstl5, LOC100041625, LOC100041635
Downstream geneDnmt3a-ps1, EG626461, LOC667526, LOC626479, LOC100041691
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185P24.T7 (MSMg01no185_p24.b1)MSMg01-185P24.TJ (MSMg01no185_p24.g1)
ACCAG377820AG377821
length751750
length of high quality
(start - end)
322 (62 - 383)286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no185_p24.b1 PHD_FILE: MSMg01no185_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:51 2005CHROMAT_FILE: MSMg01no185_p24.g1 PHD_FILE: MSMg01no185_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGCTCCTTNNCCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCAACCTATTTTAAAATTAAAAGGAGAGAGC
TTGGACTAAGAAGTATATACATATACAAATGCATATACATATACATAATA
TACATATACATGTACATACACACACACACACATATGAAGAGGACCCCCTG
CTGGTCAACAACCTGGAGTTGATACATGTCTTTCAAGGGAACTATACTAG
CCACAATCTGGCACTGAACATGGCAGCATTTTTCATGTGATGTAATTTTA
ATGGCATGAAATATTAAGAGTTGAGGGTATCATGGAGTTGTGCAACCTGT
TGCACAGTGTCCATGAGGTTAGTCAATGTGTGACAAAGTTGACGTTCCCA
CACAGAGGCTGTAAGATTCCATTTCATGAAGCTAGCATGGTGAAGGATGT
GTTTCAATAAAGAACAGAATAATAGAGCTTCTTGGACAGCAGTGCCTTTT
AAGAAAAGCTCTTCATATGGGATGAAGCTGGTTTAAGAGACAGACTGTGT
GTGCAGAAGTCAGGATATAAAATGGATAGGCACTACTCAAGCCTTTTGTA
GCCCAGATTATTGAATTTATGAACCCTGGATCCTAGGCACAAAGCTGAAA
GATTTAAAGTTTTTTCCATTTGGGTTTTAGTCTTGGATGGACCAATCCAT
GCTATGTCTAGCTTTTTTAAATTTGCCATATTAATGTCAAGTGTGTGATA
A
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGGGCTATCAGAAAAGAATCACTT
TTAAACTAGCCAGACCACACTCTAAGTCCCTCTGGTAAAGTCCCCTTCTC
ACTCTCACTCTCTCTCCCTTTCCCTCACTCTCTCCCTATTTTTTCCGTGT
GTATGTGTGTATGTGTGTGTGTGTGTGTGTTTCACTATATTATGCATAAT
TATTTACTTAGTTAATTGGATAGTCAGTTCTCATAAAAGCCTGAATAATA
AAAACTGTGGTACCACAAGTGGTTGTAGTTCAATAGCTAAATTTAATTTA
AGTAAATTATAAGGATTTATTTTTACCCCCACCGAAACAGGATTGTCAAT
TTGCTGACTCTACAATTACGGACCCCACCAAAATATATTATATGCTAGGT
GCTAGATTGTGCATTCTATCAAGGTCAGATAGATGTATATGCTGCTGCTG
TGTCTATCTTTTTCTATTATCAAATCGATTTTTTGAACAGAATAAATACA
CCACTTCTGCCAGGATTTGATGTATAAGGGAGAATGGGTTTCATCAAAAG
CTATCTAAGAGTAGGTGAGGAACCGGTATGGGTCTGAGCTAATTTAACGT
TTTTAATTTTATATTACTGATGGATGGCTATCGGGATTTCAAACACCCAT
CAGTCTGTTTTAAAGCGTTGGGATGTGAATGGGAGTGATATAATGTGGTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_p24.g1 MSMg01no185_p24.g1 CHROMAT_FILE:
MSMg01no185_p24.g1 PHD_FILE: MSMg01no185_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:51 2005
         (286 letters)



>mm_chr3_77302968_77303649
          Length = 682

 Score =  387 bits (200), Expect = e-112
 Identities = 262/292 (89%), Gaps = 17/292 (5%)
 Strand = Plus / Minus

                                                                       
Query: 6   ctatcagaaaagaatcacttttaaactagccagaccacactctaagtccctctggtaaag 65
           ||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||
Sbjct: 641 ctatcagaaaagaatcacttttaaactagccagaccacacaatgagtccctctggtaaag 582

                                                                       
Query: 66  tccccttctcactctcactctctctccctttccctcactctctccctattt--------- 116
           |||||||||||||||||||||||||||||||||||||| ||||||||||||         
Sbjct: 581 tccccttctcactctcactctctctccctttccctcaccctctccctatttgtgtgtgtg 522

                                                                       
Query: 117 --tttccgtgtgtatgtgtgtatgtgtgtgtgtgtgtgtgtttcactatattatgcataa 174
             | |  |||||| ||||||| ||||||||||||||||||||||| ||||||||||||| 
Sbjct: 521 tgtgt--gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcagtatattatgcatag 464

                                                                       
Query: 175 ttatttacttagttaattggatagtcagttctcataaaagcctgaataataaaaactgtg 234
           ||||    |||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 463 ttat----ttagttaattggttagtcagttctcagaaaagcctgaataataaaaactgtg 408

                                                               
Query: 235 gtaccacaagtggttgtagttcaatagctaaatttaatttaagtaaattata 286
           |||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 407 gtaccacaagtggttgtagggcaatagctaaatttaatttaagtaaattata 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 682
Length adjustment: 9
Effective length of query: 277
Effective length of database: 673
Effective search space:   186421
Effective search space used:   186421
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)