Query= MSMg01no186_h09.b1 MSMg01no186_h09.b1 CHROMAT_FILE:
MSMg01no186_h09.b1 PHD_FILE: MSMg01no186_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:27 2005
(570 letters)
>mm_chr3_141251885_141252855
Length = 971
Score = 988 bits (511), Expect = 0.0
Identities = 553/571 (96%), Gaps = 9/571 (1%)
Strand = Plus / Minus
Query: 5 gaattctataaagccacgtgattagctctcctaattaggaagcctgaagtcaagggcatc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 gaattctataaagccacgtgattagctctcctaattaggaagcctgaagtcaagggcatc 712
Query: 65 ctggaattaatttcattctgcttcttactataacattcagggacaatgctctgagaccct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ctggaattaatttcattctgcttcttactataacattcagggacaatgctctgagaccct 652
Query: 125 aatctctacaatgttctctcgcagccttttcataccacctaggggctcaaagcaatgctt 184
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aatctctacaatgttttctcgcagccttttcataccacctaggggctcaaagcaatgctt 592
Query: 185 cctttcccaattaccagacatggatttctcatatggaaacccctctttccccatgtccac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 cctttcccaattaccagacatggatttctcatatggaaacccctctttccccatgtccac 532
Query: 245 attaattaccctgcatcagccacaattatgaagctcctttctaggtgagttttctcaata 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 attaattaccctgcatcagccacaattatgaagctcctttctaggtgagttttctcaata 472
Query: 305 ggcttctcatgctccaggtacaccagcctttttacccttgagtaccatctttaaacttca 364
||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 471 ggcttctcaagctccaggtagacaagcctttttacccttgagtaccatctttaaacttca 412
Query: 365 gagcca----cccctttttccagctcatttttgtaggatggtatgagaatcaaagggtca 420
||| | ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 411 gaggaatttt----tttttccagcttatttttgtaggatggtatgagaatcaaagggtca 356
Query: 421 tgcatatagctcaagagagaagaga-tcccaaagtccctctcttaccctatgtatcacat 479
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 355 tgcatatagctaaagagagaagagattcccaaagtccctctcttaccctatgtatcacat 296
Query: 480 ccaccatccacttctaggacataacagtttcttcacaagttaaagaaaaacacaaccaaa 539
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 295 ccaccatccacttctaggacataacagtttcttcataagttaaagaaaaacacaaccaaa 236
Query: 540 aatagattaaattcaacatctcttcccgcac 570
|||||||||||||||||||||||||||||||
Sbjct: 235 aatagattaaattcaacatctcttcccgcac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 971
Length adjustment: 10
Effective length of query: 560
Effective length of database: 961
Effective search space: 538160
Effective search space used: 538160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no186_h09.g1 MSMg01no186_h09.g1 CHROMAT_FILE:
MSMg01no186_h09.g1 PHD_FILE: MSMg01no186_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:27 2005
(338 letters)
>mm_chr3_141224175_141224912
Length = 738
Score = 621 bits (321), Expect = 0.0
Identities = 330/333 (99%)
Strand = Plus / Plus
Query: 1 taatgtctacaaatgccctgctgggggatgccaaactaatggctacttaaatttcaaatt 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatgtctacaaacgccctgctgggggatgccaaactaatggctacttaaatttcaaatt 260
Query: 61 tgtcatagtttctggcatgaatacaggcttcctattatatggacttagtgttaacaccct 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 tgtcatagtttctggcatgaatacaggcttcctattatatggacttggtgttaacaccct 320
Query: 121 ttgctttcatcgctggcattcatttactattctgtgtcaaacaatgttttagacattttt 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgctttcatcgctggcattcattgactattctgtgtcaaacaatgttttagacattttt 380
Query: 181 acatatatgctctattggagtagtcttcagggcttctgagctaatgagggaaaagataat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatatatgctctattggagtagtcttcagggcttctgagctaatgagggaaaagataat 440
Query: 241 ctcctgattgttgttatatctggcctaatccagttctcagaaattcacaggagcttaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcctgattgttgttatatctggcctaatccagttctcagaaattcacaggagcttaata 500
Query: 301 atccttcagtctttaaaggtatttttatttaaa 333
|||||||||||||||||||||||||||||||||
Sbjct: 501 atccttcagtctttaaaggtatttttatttaaa 533
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space: 239841
Effective search space used: 239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
